PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG047330.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 268aa MW: 30986.4 Da PI: 9.329

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG047330.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3.1e-06	212	233	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 e Cr++++ C++ ++C+FaH+ TRIDC2BG047330.3 212 VEVCRDYLK-KMCNR-ESCRFAHP 233 589****.*.*****9 PP
2	zf-CCCH	20.7	7.4e-07	243	265	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k e Cr+f r G+C + ++C+F H+ TRIDC2BG047330.3 243 KVEVCRDFKR-GECTR-PTCRFYHP 265 89******.*.*****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence
RSRSRSRSRS RSRSPRQPEG KRRRQNDLTV EACRDYLRDR CTRSDLECKY AHPHQSVSVD 60 RDSKVTACAD SLRNNCFRGR TCRYYHPPPH IQESLLRSIG LDVPPVKTVC RDFARGRCSR 120 SANECRFLHH SSVQECAIVC QDFLRGRCDR ISCRYTHVIA QPMLPPPMRD VPMQMPYPEM 180 VYMPPPPPPL GVPMMAPPLS PPRGFADNKS TVEVCRDYLK KMCNRESCRF AHPDSQTEVA 240 HDKVEVCRDF KRGECTRPTC RFYHPSSS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1	9	RSRSRSRSR
2	1	11	RSRSRSRSRSR
3	3	11	RSRSRSRSR
4	3	13	RSRSRSRSRSR
5	5	13	RSRSRSRSR

Link Out ? help Back to Top
Ensembl	TRIDC2BG047330.3