PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG039960.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 420aa MW: 45519.2 Da PI: 9.016

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG039960.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	40.4	7.1e-13	262	318	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a+++a++k++g TRIDC2BG039960.1 262 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 318 78*****************77776664346655.77****************98 PP
2	AP2	28.7	3.4e-09	363	395	3	38
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgt 38 y+GV+++++ grW A+I +s +k +lg+fgt TRIDC2BG039960.1 363 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGT 395 9*************999754...5*******9 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MTNNNCNGNG GSNAAASGWL GFSLSPHMDE HNHVQQQQQH QGLFYPSSVA AAYSLGGDVA 60 TGGYYSQLAS MPLKSDGSLC IMEALRRTDQ QDHNGPKLED FLGAGQPAMA LSLDNTSNFY 120 YYGGGGGAGG QHGQSHGGCF LQQAYDVYGG PATASVLAAD EDAAAATAMA NWVQVARGAT 180 AYATAENVLS AAADRQQHLH HHPLALSMSS AGSLSSCVTA GAEYGGVVAT VDGGRKRGGA 240 TAGQKQPVHH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD 300 MEEKAARAYD QAALKYWGPS THINFPLEDY QQELEEMKNM TRQEYVAHLR RKSSGFSRGA 360 SMYRGVTRHH QHGRWQARIG RVSGNKDLYL GTFGTSQLTA TLSRSLELPW RCARGHARER

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MTNNNCNGNG GSNAAASGWL GFSLSPHMDE HNHVQQQQQH QGLFYPSSVA AAYSLGGDVA  60
TGGYYSQLAS MPLKSDGSLC IMEALRRTDQ QDHNGPKLED FLGAGQPAMA LSLDNTSNFY  120
YYGGGGGAGG QHGQSHGGCF LQQAYDVYGG PATASVLAAD EDAAAATAMA NWVQVARGAT  180
AYATAENVLS AAADRQQHLH HHPLALSMSS AGSLSSCVTA GAEYGGVVAT VDGGRKRGGA  240
TAGQKQPVHH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL WDNSCKKEGQ TRKGRQGGYD  300
MEEKAARAYD QAALKYWGPS THINFPLEDY QQELEEMKNM TRQEYVAHLR RKSSGFSRGA  360
SMYRGVTRHH QHGRWQARIG RVSGNKDLYL GTFGTSQLTA TLSRSLELPW RCARGHARER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	6e-94	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG039960.1