PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG028430.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HRT-like

Protein Properties

Length: 401aa MW: 43798.5 Da PI: 9.8171

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG028430.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56	6.8e-18	155	185	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ledGs C + P++gRKRCe HKG+R+ TRIDC2BG028430.2 155 VCGVMLEDGSSCLEDPMEGRKRCELHKGRRV 185 7*****************************7 PP
2	HRT-like	28.6	2.4e-09	316	342	1	28
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 iCGv +++G Ck Pv gR RCeeH G TRIDC2BG028430.2 316 ICGVVTDNG-YCKLAPVTGRERCEEHGG 342 8*****9.6*************66 PP
3	HRT-like	48.3	1.7e-15	362	391	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++ +dGs+Ck+qP+ RKRC+ HKG+R TRIDC2BG028430.2 362 VCGARASDGSPCKNQPIARRKRCALHKGQR 391 7****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence
MGSKKAAEKT EAQLLGVFDY AWNKLQNGVC RREEILLKLE QGSHRLSLLG RVQHFKQRVF 60 GEKAGIKINS SGSVEISSGS MKNMLPRVRR FVGFRPRLVN SGDGLNEAID IHRKCTPQTN 120 TAGNKQARRK SEGYKVKKID VIKRQTVPTR EAEAVCGVML EDGSSCLEDP MEGRKRCELH 180 KGRRVRVAYS RKVSSSSSTC QVAIPTVESI PQQTANPSKP DQAWQTNADQ SKNLSTNVKE 240 PSQQRNSLEA KEMKIGEAPT EDEAYGTSHA ESQFHQDEPV GRKWFELLKA QKSASAPSLR 300 GQGCQTREAN DDASAICGVV TDNGYCKLAP VTGRERCEEH GGIEVTGASS APCSGRSGWP 360 SVCGARASDG SPCKNQPIAR RKRCALHKGQ RGCCASTPSV K

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence

MGSKKAAEKT EAQLLGVFDY AWNKLQNGVC RREEILLKLE QGSHRLSLLG RVQHFKQRVF  60
GEKAGIKINS SGSVEISSGS MKNMLPRVRR FVGFRPRLVN SGDGLNEAID IHRKCTPQTN  120
TAGNKQARRK SEGYKVKKID VIKRQTVPTR EAEAVCGVML EDGSSCLEDP MEGRKRCELH  180
KGRRVRVAYS RKVSSSSSTC QVAIPTVESI PQQTANPSKP DQAWQTNADQ SKNLSTNVKE  240
PSQQRNSLEA KEMKIGEAPT EDEAYGTSHA ESQFHQDEPV GRKWFELLKA QKSASAPSLR  300
GQGCQTREAN DDASAICGVV TDNGYCKLAP VTGRERCEEH GGIEVTGASS APCSGRSGWP  360
SVCGARASDG SPCKNQPIAR RKRCALHKGQ RGCCASTPSV K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	3e-15	HRT-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG028430.2