PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG028430.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HRT-like

Protein Properties

Length: 606aa MW: 65750.3 Da PI: 9.8976

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG028430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.3	1.1e-17	360	390	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ledGs C + P++gRKRCe HKG+R+ TRIDC2BG028430.1 360 VCGVMLEDGSSCLEDPMEGRKRCELHKGRRV 390 7*****************************7 PP
2	HRT-like	27.9	3.9e-09	521	547	1	28
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 iCGv +++G Ck Pv gR RCeeH G TRIDC2BG028430.1 521 ICGVVTDNG-YCKLAPVTGRERCEEHGG 547 8*****9.6*************66 PP
3	HRT-like	47.5	2.9e-15	567	596	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++ +dGs+Ck+qP+ RKRC+ HKG+R TRIDC2BG028430.1 567 VCGARASDGSPCKNQPIARRKRCALHKGQR 596 7****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
CVNGWTDPGR AIKFKIPNRP RFSKDDSPSL GGDATGGGAE PTCQTLPGSA LGRGGVAMPA 60 VAAARLKRED CPRTKHDSLF SPWKVLVGPS DWEDHSAGKE GVQRYHTRNL PDNFPGLYEL 120 GVARPSYDGV RAGRNRSVVV VVVYLGQADS VRARLQQYGR TGSHLDTGNP LAAVGKAEMN 180 ALTAGPGLFR EVFSRGYSVM FRCALMGSKK AAEKTEAQLL GVFDYAWNKL QNGVCRREEI 240 LLKLEQGSHR LSLLGRVQHF KQRVFGEKAG IKINSSGSVE ISSGSMKNML PRVRRFVGFR 300 PRLVNSGDGL NEAIDIHRKC TPQTNTAGNK QARRKSEGYK VKKIDVIKRQ TVPTREAEAV 360 CGVMLEDGSS CLEDPMEGRK RCELHKGRRV RVAYSRKVSS SSSTCQVAIP TVESIPQQTA 420 NPSKPDQAWQ TNADQSKNLS TNVKEPSQQR NSLEAKEMKI GEAPTEDEAY GTSHAESQFH 480 QDEPVGRKWF ELLKAQKSAS APSLRGQGCQ TREANDDASA ICGVVTDNGY CKLAPVTGRE 540 RCEEHGGIEV TGASSAPCSG RSGWPSVCGA RASDGSPCKN QPIARRKRCA LHKGQRGCCA 600 STPSVK

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

CVNGWTDPGR AIKFKIPNRP RFSKDDSPSL GGDATGGGAE PTCQTLPGSA LGRGGVAMPA  60
VAAARLKRED CPRTKHDSLF SPWKVLVGPS DWEDHSAGKE GVQRYHTRNL PDNFPGLYEL  120
GVARPSYDGV RAGRNRSVVV VVVYLGQADS VRARLQQYGR TGSHLDTGNP LAAVGKAEMN  180
ALTAGPGLFR EVFSRGYSVM FRCALMGSKK AAEKTEAQLL GVFDYAWNKL QNGVCRREEI  240
LLKLEQGSHR LSLLGRVQHF KQRVFGEKAG IKINSSGSVE ISSGSMKNML PRVRRFVGFR  300
PRLVNSGDGL NEAIDIHRKC TPQTNTAGNK QARRKSEGYK VKKIDVIKRQ TVPTREAEAV  360
CGVMLEDGSS CLEDPMEGRK RCELHKGRRV RVAYSRKVSS SSSTCQVAIP TVESIPQQTA  420
NPSKPDQAWQ TNADQSKNLS TNVKEPSQQR NSLEAKEMKI GEAPTEDEAY GTSHAESQFH  480
QDEPVGRKWF ELLKAQKSAS APSLRGQGCQ TREANDDASA ICGVVTDNGY CKLAPVTGRE  540
RCEEHGGIEV TGASSAPCSG RSGWPSVCGA RASDGSPCKN QPIARRKRCA LHKGQRGCCA  600
STPSVK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	6e-58	HRT-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG028430.1