PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC2BG028050.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family LBD
Protein Properties Length: 197aa    MW: 20373.3 Da    PI: 8.5973
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC2BG028050.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26096.62.6e-3019120197
            DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                       +C++C+vlr++C++ Cvl+p++     +++q +++ +++k+FG++ ++++l+a+pe++r+++++sl+yeA  r+ +Pv+Gavg++++++++l+
  TRIDC2BG028050.1  19 SCNGCRVLRKGCNEACVLRPCLlwieaADAQGHATLFAAKFFGRAGLMSFLTAVPEQQRPAVFQSLLYEAAGRTINPVSGAVGLLWAGSWHLC 111
                       6*********************9998666778************************************************************* PP

            DUF260  89 qlkaelall 97 
                       +++++++l+
  TRIDC2BG028050.1 112 EAAVQTVLR 120
                       **9998776 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MRGSERAAVS ASASTSGMSC NGCRVLRKGC NEACVLRPCL LWIEAADAQG HATLFAAKFF  60
GRAGLMSFLT AVPEQQRPAV FQSLLYEAAG RTINPVSGAV GLLWAGSWHL CEAAVQTVLR  120
GGAIRPLPEL AGGVPEGGVG GSDLFASSSR RAVVGCSTYS AAKRVTPRKT WAPEAASHHQ  180
EPSCDLGLFL TPGSAAA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67420.19e-65LBD family protein