PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC2BG025920.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 164aa MW: 19025.8 Da PI: 9.6133 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99 | 1.8e-31 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeyss TRIDC2BG025920.5 10 RIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSS 59 8***********************************************96 PP | |||||||
2 | K-box | 88.6 | 1.2e-29 | 87 | 161 | 13 | 87 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 +++++ e+ Lk +++ Lq++qR+llGe+L++L+ keLqqLeqqL++slk+iRs+Kn+ll+e+i+elqkk++ l TRIDC2BG025920.5 87 NQANWGDEYGSLKIKLDALQKSQRQLLGEQLDPLTTKELQQLEQQLDSSLKHIRSRKNQLLFESISELQKKKEPL 161 6789*******************************************************************9865 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 164 aa Download sequence |
MGRGPVQLRR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSSQ 60 DSMDVILERY QRYSFEERAV LDPSIGNQAN WGDEYGSLKI KLDALQKSQR QLLGEQLDPL 120 TTKELQQLEQ QLDSSLKHIR SRKNQLLFES ISELQKKKEP LEFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G69120.1 | 7e-63 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC2BG025920.5 |