PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG018540.6

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 539aa MW: 60938.1 Da PI: 9.6925

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG018540.6	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	45.4	1.4e-14	16	67	6	57
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++ q++ Le+++ + +yp+ e+ +e A+++gLt +qV++WF+ rR kek+ TRIDC2BG018540.6 16 KKSPLQIQMLESFYSEVQYPKPEDVTEYAASVGLTYNQVRIWFKERRRKEKR 67 66899**********************************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 539 aa Download sequence
MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDV TEYAASVGLT YNQVRIWFKE 60 RRRKEKRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS PTQDTTGHHS YQDQSVLKKR 120 KIMSPTAQRS TLPFENNDPV RKHGKGKGLM TVWHAMYSQT AEIQDCSSFI DESGCLRSLR 180 PFEDCGRKLA QVQRQTSPQK KVNKKSRPPP SKRKVPCGRV TDLTEHPPVE CHLSVDESES 240 SELRTEQATL VDDEELELSE LQAGPNPLRC SAHISSTGRH GCPLCKDLLA RFPPPSVRMK 300 QLFPTKPWES SPEMVKKLFQ VVRFVYTHFG SLDVHPFTFD EFAQAFHDKD SSLLGKVHVS 360 LLKLLMLNTE RGSGSVFVPR SSKDSRFLSF LNFVREQEFD VNFWIKSLNS LTWVEILRQV 420 LVASGFGSDH HMLNRNFFNK XKNQMVKYGL RPRTLKGELF ALLSKKGSSG LKVAELAKSP 480 QIIGINLSGA SEVEQLIFST LSSDITLFEK IAPSAYRLRV DPRIKGKEDP ISDTEDSGT

Sequence ? help Back to Top

Protein Sequence Length: 539 aa Download sequence

MMAKGFLAKS DNAGTKKSPL QIQMLESFYS EVQYPKPEDV TEYAASVGLT YNQVRIWFKE  60
RRRKEKRHME AAEVHMETQA SARSNWPRCS SSRSSNSSQS PTQDTTGHHS YQDQSVLKKR  120
KIMSPTAQRS TLPFENNDPV RKHGKGKGLM TVWHAMYSQT AEIQDCSSFI DESGCLRSLR  180
PFEDCGRKLA QVQRQTSPQK KVNKKSRPPP SKRKVPCGRV TDLTEHPPVE CHLSVDESES  240
SELRTEQATL VDDEELELSE LQAGPNPLRC SAHISSTGRH GCPLCKDLLA RFPPPSVRMK  300
QLFPTKPWES SPEMVKKLFQ VVRFVYTHFG SLDVHPFTFD EFAQAFHDKD SSLLGKVHVS  360
LLKLLMLNTE RGSGSVFVPR SSKDSRFLSF LNFVREQEFD VNFWIKSLNS LTWVEILRQV  420
LVASGFGSDH HMLNRNFFNK XKNQMVKYGL RPRTLKGELF ALLSKKGSSG LKVAELAKSP  480
QIIGINLSGA SEVEQLIFST LSSDITLFEK IAPSAYRLRV DPRIKGKEDP ISDTEDSGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	61	66	RRRKEK
2	118	147	KKRKIMSPTAQRSTLPFENNDPVRKHGKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	3e-81	HB-other family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG018540.6