PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2BG004730.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 900aa MW: 97496.1 Da PI: 5.0532

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2BG004730.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	106	133	2	25
-S---SGGGGTS....--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartG....tCkyGdrCkFaH 25 kt+lC+ff+r G C++G+ C++aH TRIDC2BG004730.8 106 KTSLCSFFRRRGggpdGCNHGEACRYAH 133 9*************************** PP

Sequence ? help Back to Top
Protein Sequence Length: 900 aa Download sequence
AAMEDTTTPP PQETEQQAPD LTGEKRKREE ETPEAASGEN PAMEDATQPP APQQEAEPAG 60 EKRKREEESP ETAAGDAPAP SAPAGVEAAA AATTGEGGGE RHPMSKTSLC SFFRRRGGGP 120 DGCNHGEACR YAHTEEELRP RPDGTWDPTS DRAKKLRRVS EEEDGEEKAR GRWGQEEEVT 180 FDESSLDKCL VGLSRHWLTD RLKAFLDEQG ISYAIAKKKK GMTVGFVTFE TVEQLRNAVE 240 VLKENRSGGK QIKIADANRR SHQKLHSEGP LSINGAATEN SSDAVAPADG TSGPEAAGAS 300 KRTVRDAVTP LAHMAYSDQL EHKKSSVAQL LKKLTRNAKK ACPADVTLPD WISNAKQIGG 360 LSCKLEGILE SPVIDGYRNK CEFSVGHSLA GKKTVGFMLG NFREGVTAVE EPVDCPNVSA 420 MSCTYAMIFQ DFLQLSCLPA WNRVDNSGFW RQFTVREGRS PAQAVVAQDT QTQISEVMII 480 IQVCSTGVDE VLMKDEFAKL SKTLVQGAAT CSPPLPLTTI VVQDHVGISN VAPADCPLIP 540 LLAPEVDQSE EGAVDKTRIH DHISNLRFSL SPTAFFQVNT LAAERLYTLA GDWANLNSDT 600 LLFDVCCGTG TIGLTLAHRV GMVVGIEMNE SAVVDAQRNA LINGIKNCRF VCGKAEDVMG 660 SLLTEYLGSP QQHIAASESN SEVNGTGKKE DIVGGAEDNG KSMESLTEKN DTGEINEDLD 720 DGVSKELEGG HEQCNEAVRN QNSEEASSLV NEESVDAKAA DCSEHTKTRE EGSSISKNDV 780 LAATACQFKN FVAIVDPPRA GLHPTVIKVL RTHPRIRRLV YISCNPDTLV ANAIELCTPS 840 TEHREKNKGH RGWRNMSSAG LARQRTKSMP NSEPFVPKRA MAVDLFPHTS HCEMVMLFER

Sequence ? help Back to Top

Protein Sequence Length: 900 aa Download sequence

AAMEDTTTPP PQETEQQAPD LTGEKRKREE ETPEAASGEN PAMEDATQPP APQQEAEPAG  60
EKRKREEESP ETAAGDAPAP SAPAGVEAAA AATTGEGGGE RHPMSKTSLC SFFRRRGGGP  120
DGCNHGEACR YAHTEEELRP RPDGTWDPTS DRAKKLRRVS EEEDGEEKAR GRWGQEEEVT  180
FDESSLDKCL VGLSRHWLTD RLKAFLDEQG ISYAIAKKKK GMTVGFVTFE TVEQLRNAVE  240
VLKENRSGGK QIKIADANRR SHQKLHSEGP LSINGAATEN SSDAVAPADG TSGPEAAGAS  300
KRTVRDAVTP LAHMAYSDQL EHKKSSVAQL LKKLTRNAKK ACPADVTLPD WISNAKQIGG  360
LSCKLEGILE SPVIDGYRNK CEFSVGHSLA GKKTVGFMLG NFREGVTAVE EPVDCPNVSA  420
MSCTYAMIFQ DFLQLSCLPA WNRVDNSGFW RQFTVREGRS PAQAVVAQDT QTQISEVMII  480
IQVCSTGVDE VLMKDEFAKL SKTLVQGAAT CSPPLPLTTI VVQDHVGISN VAPADCPLIP  540
LLAPEVDQSE EGAVDKTRIH DHISNLRFSL SPTAFFQVNT LAAERLYTLA GDWANLNSDT  600
LLFDVCCGTG TIGLTLAHRV GMVVGIEMNE SAVVDAQRNA LINGIKNCRF VCGKAEDVMG  660
SLLTEYLGSP QQHIAASESN SEVNGTGKKE DIVGGAEDNG KSMESLTEKN DTGEINEDLD  720
DGVSKELEGG HEQCNEAVRN QNSEEASSLV NEESVDAKAA DCSEHTKTRE EGSSISKNDV  780
LAATACQFKN FVAIVDPPRA GLHPTVIKVL RTHPRIRRLV YISCNPDTLV ANAIELCTPS  840
TEHREKNKGH RGWRNMSSAG LARQRTKSMP NSEPFVPKRA MAVDLFPHTS HCEMVMLFER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.1	0.0	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2BG004730.8