PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG076510.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 649aa MW: 72873.1 Da PI: 5.4004

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG076510.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.7e-08	53	76	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C Gd+C+F+Hgp TRIDC2AG076510.2 53 MVPCYYFQK-GNCIKGDKCPFSHGP 76 789****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MNPRDCYYWL NGNCLNPKCS FRHPPIDGMF GASTPGIPAV SSHYAAYNSG KQMVPCYYFQ 60 KGNCIKGDKC PFSHGPQPAG NNPLEQVAKV SSFPLEQPQT QKNEFLGVKE FAQTNHLIQQ 120 GGPISDDRSK SVNRAAGNFA RTAAAAIPAE LASSAVKSLP KSGSVQNSMP AVNKGFRTSS 180 GEDHPECYQN NLPVETDPMQ DWNQPYHTPP QDDMPEDSRD ADDLLGESSP GFDVLVANDA 240 DAGAYMHDPD DFGRDIYPVE DYEYAPADFE IQPHHERELF NGMGEQGPIG QMYDGYDRKR 300 RRTSSERNLD RPSYSERRSR QRETGPVEID GSDLRHRLRR RKINGSPGIS PERSGESRRR 360 DDRYRERAYD GHRTHRDRHQ GPRGSTLSSR LQGRIKLPGR SPDRVDARSE RERDRRQLRD 420 RLSPVVPMDI QGGRHREAGH HQERIRQRSS ERASSARIAD GKHSRRNVTD SLNFASRKDF 480 GPESRKANGS VQSEASLDFE GPTPLSVILQ RKRQAACGNG NGSSAHNVKE DKSATVSHRQ 540 AESLVEAEKE GYDNTISSEE CKSRSGDEEY KEEGQVPASS SHGDKAEAED MIEVENQEAD 600 NYEQRQGESE YEATEGYEYK SEDENAYQDD EEEFEDDDDF ARKVGVVFS

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MNPRDCYYWL NGNCLNPKCS FRHPPIDGMF GASTPGIPAV SSHYAAYNSG KQMVPCYYFQ  60
KGNCIKGDKC PFSHGPQPAG NNPLEQVAKV SSFPLEQPQT QKNEFLGVKE FAQTNHLIQQ  120
GGPISDDRSK SVNRAAGNFA RTAAAAIPAE LASSAVKSLP KSGSVQNSMP AVNKGFRTSS  180
GEDHPECYQN NLPVETDPMQ DWNQPYHTPP QDDMPEDSRD ADDLLGESSP GFDVLVANDA  240
DAGAYMHDPD DFGRDIYPVE DYEYAPADFE IQPHHERELF NGMGEQGPIG QMYDGYDRKR  300
RRTSSERNLD RPSYSERRSR QRETGPVEID GSDLRHRLRR RKINGSPGIS PERSGESRRR  360
DDRYRERAYD GHRTHRDRHQ GPRGSTLSSR LQGRIKLPGR SPDRVDARSE RERDRRQLRD  420
RLSPVVPMDI QGGRHREAGH HQERIRQRSS ERASSARIAD GKHSRRNVTD SLNFASRKDF  480
GPESRKANGS VQSEASLDFE GPTPLSVILQ RKRQAACGNG NGSSAHNVKE DKSATVSHRQ  540
AESLVEAEKE GYDNTISSEE CKSRSGDEEY KEEGQVPASS SHGDKAEAED MIEVENQEAD  600
NYEQRQGESE YEATEGYEYK SEDENAYQDD EEEFEDDDDF ARKVGVVFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	302	RKRRR
2	298	303	RKRRRT

Link Out ? help Back to Top
Ensembl	TRIDC2AG076510.2