PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG076510.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 667aa MW: 74776.1 Da PI: 5.4785

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG076510.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.8	3.8e-08	71	94	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +f++ G C Gd+C+F+Hgp TRIDC2AG076510.1 71 MVPCYYFQK-GNCIKGDKCPFSHGP 94 789****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
CGVNAGNQCD FRHSEGARMN PRDCYYWLNG NCLNPKCSFR HPPIDGMFGA STPGIPAVSS 60 HYAAYNSGKQ MVPCYYFQKG NCIKGDKCPF SHGPQPAGNN PLEQVAKVSS FPLEQPQTQK 120 NEFLGVKEFA QTNHLIQQGG PISDDRSKSV NRAAGNFART AAAAIPAELA SSAVKSLPKS 180 GSVQNSMPAV NKGFRTSSGE DHPECYQNNL PVETDPMQDW NQPYHTPPQD DMPEDSRDAD 240 DLLGESSPGF DVLVANDADA GAYMHDPDDF GRDIYPVEDY EYAPADFEIQ PHHERELFNG 300 MGEQGPIGQM YDGYDRKRRR TSSERNLDRP SYSERRSRQR ETGPVEIDGS DLRHRLRRRK 360 INGSPGISPE RSGESRRRDD RYRERAYDGH RTHRDRHQGP RGSTLSSRLQ GRIKLPGRSP 420 DRVDARSERE RDRRQLRDRL SPVVPMDIQG GRHREAGHHQ ERIRQRSSER ASSARIADGK 480 HSRRNVTDSL NFASRKDFGP ESRKANGSVQ SEASLDFEGP TPLSVILQRK RQAACGNGNG 540 SSAHNVKEDK SATVSHRQAE SLVEAEKEGY DNTISSEECK SRSGDEEYKE EGQVPASSSH 600 GDKAEAEDMI EVENQEADNY EQRQGESEYE ATEGYEYKSE DENAYQDDEE EFEDDDDFAR 660 KVGVVFS

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

CGVNAGNQCD FRHSEGARMN PRDCYYWLNG NCLNPKCSFR HPPIDGMFGA STPGIPAVSS  60
HYAAYNSGKQ MVPCYYFQKG NCIKGDKCPF SHGPQPAGNN PLEQVAKVSS FPLEQPQTQK  120
NEFLGVKEFA QTNHLIQQGG PISDDRSKSV NRAAGNFART AAAAIPAELA SSAVKSLPKS  180
GSVQNSMPAV NKGFRTSSGE DHPECYQNNL PVETDPMQDW NQPYHTPPQD DMPEDSRDAD  240
DLLGESSPGF DVLVANDADA GAYMHDPDDF GRDIYPVEDY EYAPADFEIQ PHHERELFNG  300
MGEQGPIGQM YDGYDRKRRR TSSERNLDRP SYSERRSRQR ETGPVEIDGS DLRHRLRRRK  360
INGSPGISPE RSGESRRRDD RYRERAYDGH RTHRDRHQGP RGSTLSSRLQ GRIKLPGRSP  420
DRVDARSERE RDRRQLRDRL SPVVPMDIQG GRHREAGHHQ ERIRQRSSER ASSARIADGK  480
HSRRNVTDSL NFASRKDFGP ESRKANGSVQ SEASLDFEGP TPLSVILQRK RQAACGNGNG  540
SSAHNVKEDK SATVSHRQAE SLVEAEKEGY DNTISSEECK SRSGDEEYKE EGQVPASSSH  600
GDKAEAEDMI EVENQEADNY EQRQGESEYE ATEGYEYKSE DENAYQDDEE EFEDDDDFAR  660
KVGVVFS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	316	320	RKRRR
2	316	321	RKRRRT

Link Out ? help Back to Top
Ensembl	TRIDC2AG076510.1