PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG070620.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 411aa MW: 44351.9 Da PI: 7.6731

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG070620.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.6	2.3e-40	178	256	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ TRIDC2AG070620.3 178 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 256 6****************************98725689***********************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 411 aa Download sequence
MMNLPPAAVN SCDEFGYGAP NPPPPSLFPI MDHQEGGGGI HREHDHHHHH HLGGYSLEPS 60 SLALLPPSSH ATIAAHSPHD ILQFYHHPTS HHYLAAAAAG GNGSPYGQFG GGGTAGGFQS 120 YYHQQAGTGA PEYYFPTLVS SAEENMASFA ATQLGLNLGY RTYFPPRGGY TYGHHPPRCQ 180 AEGCKADLSG AKRYHRRHKV CEHHSKAPVV VTAGGLHQRF CQQCSRFHLL DEFDDAKKSC 240 RKRLADHNRR RRKSKPSEGD AADKRRAQAS KAASAKGKAA GSSSKSTGTG DAMDIQVQLG 300 SGDLSKDQDE TMGHGEAVKE MQVDPKGKAS MMQQQQQQQG HHGHGLHLQS QHGFPFPSSS 360 AGSCFPQSQA VSSTDNTSNI GHVQQEQPAL GFHQHSNILQ LGQAMFDLDF D

Sequence ? help Back to Top

Protein Sequence Length: 411 aa Download sequence

MMNLPPAAVN SCDEFGYGAP NPPPPSLFPI MDHQEGGGGI HREHDHHHHH HLGGYSLEPS  60
SLALLPPSSH ATIAAHSPHD ILQFYHHPTS HHYLAAAAAG GNGSPYGQFG GGGTAGGFQS  120
YYHQQAGTGA PEYYFPTLVS SAEENMASFA ATQLGLNLGY RTYFPPRGGY TYGHHPPRCQ  180
AEGCKADLSG AKRYHRRHKV CEHHSKAPVV VTAGGLHQRF CQQCSRFHLL DEFDDAKKSC  240
RKRLADHNRR RRKSKPSEGD AADKRRAQAS KAASAKGKAA GSSSKSTGTG DAMDIQVQLG  300
SGDLSKDQDE TMGHGEAVKE MQVDPKGKAS MMQQQQQQQG HHGHGLHLQS QHGFPFPSSS  360
AGSCFPQSQA VSSTDNTSNI GHVQQEQPAL GFHQHSNILQ LGQAMFDLDF D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	249	266	RRRRKSKPSEGDAADKRR
2	249	278	RRRRKSKPSEGDAADKRRAQASKAASAKGK
3	250	255	RRRKSK
4	250	279	RRRRKSKPSEGDAADKRRAQASKAASAKGK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G02065.1	2e-42	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG070620.3