PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC2AG070620.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | SBP | ||||||||
Protein Properties | Length: 410aa MW: 44253.7 Da PI: 7.5421 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.6 | 2.3e-40 | 178 | 256 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ TRIDC2AG070620.2 178 RCQAEGCKADLSGAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 256 6******************************98725689*************************************975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 410 aa Download sequence |
MMNLPPAAVN SCDEFGYGAP NPPPPSLFPI MDHQEGGGGI HREHDHHHHH HLGGYSLEPS 60 SLALLPPSSH ATIAAHSPHD ILQFYHHPTS HHYLAAAAAG GNGSPYGQFG GGGTAGGFQS 120 YYHQQAGTGA PEYYFPTLVS SAEENMASFA ATQLGLNLGY RTYFPPRGGY TYGHHPPRCQ 180 AEGCKADLSG AKRYHRRHKV CEHHSKAPVV VTAGGLHQRF CQQCSRFHLL DEFDDAKKSC 240 RKRLADHNRR RRKSKPSEGD AADKRRAQAS KAASAKGTAG SSSKSTGTGD AMDIQVQLGS 300 GDLSKDQDET MGHGEAVKEM QVDPKGKASM MQQQQQQQGH HGHGLHLQSQ HGFPFPSSSA 360 GSCFPQSQAV SSTDNTSNIG HVQQEQPALG FHQHSNILQL GQAMFDLDFD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 249 | 266 | RRRRKSKPSEGDAADKRR |
2 | 250 | 255 | RRRKSK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02065.1 | 2e-42 | SBP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC2AG070620.2 |