PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC2AG068740.6
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 321aa    MW: 33777 Da    PI: 10.5408
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC2AG068740.6genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.9e-08111136227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       kt+ C  +     Ck+Gd+C+FaHg+
  TRIDC2AG068740.6 111 KTRMCTKYNTAEGCKFGDKCHFAHGE 136
                       89**********************96 PP
2zf-CCCH38.32.3e-12287312127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       ykt++C +f++ GtC +G+rC+FaHg+
  TRIDC2AG068740.6 287 YKTKICENFLK-GTCTFGERCHFAHGE 312
                       9**********.*************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    
RPKRFRTWPL PPSAAPHSAS AKPQARVSAS TRRARHGCRR PQEIPAGVRQ RRRRRREAVE  60
STVGCPFGEG CHFAHFVPGG YQAVSKSHSL GHAAVSAPSR APADHAASGV KTRMCTKYNT  120
AEGCKFGDKC HFAHGERELG RPPSSYMSQE SSYAPPMGGR YGGRHEPPPP ASMGPPAGNF  180
GASSTCKVSV DAALAGGIIG KGGVNTKQIC RITGVKLSIR DHESNPDLKN IELEGSFDQI  240
KQANDMVRDL IASISASTPS KNPASAAAPA GRGGGGGGGG PGGRSNYKTK ICENFLKGTC  300
TFGERCHFAH GETEQRKGAA V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14956RQRRRRRR
25056QRRRRRR
35156RRRRRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-49C3H family protein