PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC2AG068740.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 282aa MW: 29177.6 Da PI: 8.7512 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.4 | 2.5e-08 | 72 | 97 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2AG068740.5 72 KTRMCTKYNTAEGCKFGDKCHFAHGE 97 89**********************96 PP | |||||||
2 | zf-CCCH | 38.5 | 1.9e-12 | 248 | 273 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2AG068740.5 248 YKTKICENFLK-GTCTFGERCHFAHGE 273 9**********.*************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence |
EESESQQTGL SSKSKPCTKF FSTVGCPFGE GCHFAHFVPG GYQAVSKSHS LGHAAVSAPS 60 RAPADHAASG VKTRMCTKYN TAEGCKFGDK CHFAHGEREL GRPPSSYMSQ ESSYAPPMGG 120 RYGGRHEPPP PASMGPPAGN FGASSTCKVS VDAALAGGII GKGGVNTKQI CRITGVKLSI 180 RDHESNPDLK NIELEGSFDQ IKQANDMVRD LIASISASTP SKNPASAAAP AGRGGGGGGG 240 GPGGRSNYKT KICENFLKGT CTFGERCHFA HGETEQRKGA AV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 9e-58 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC2AG068740.5 |