PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG068740.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 321aa MW: 33206.2 Da PI: 10.0606

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG068740.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.2	2.9e-08	111	136	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2AG068740.4 111 KTRMCTKYNTAEGCKFGDKCHFAHGE 136 89**********************96 PP
2	zf-CCCH	38.3	2.3e-12	287	312	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2AG068740.4 287 YKTKICENFLK-GTCTFGERCHFAHGE 312 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence
PNRKLGFPPR RGGLAMDAAA RKRSRPESAN GGAAGGKRSR ESESQQTGLS SKSKPCTKFF 60 STVGCPFGEG CHFAHFVPGG YQAVSKSHSL GHAAVSAPSR APADHAASGV KTRMCTKYNT 120 AEGCKFGDKC HFAHGERELG RPPSSYMSQE SSYAPPMGGR YGGRHEPPPP ASMGPPAGNF 180 GASSTCKVSV DAALAGGIIG KGGVNTKQIC RITGVKLSIR DHESNPDLKN IELEGSFDQI 240 KQANDMVRDL IASISASTPS KNPASAAAPA GRGGGGGGGG PGGRSNYKTK ICENFLKGTC 300 TFGERCHFAH GETEQRKGAA V

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-60	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG068740.4