PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG068740.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 272aa MW: 27935.2 Da PI: 9.0042

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG068740.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.5	2.3e-08	62	87	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C + Ck+Gd+C+FaHg+ TRIDC2AG068740.2 62 KTRMCTKYNTAEGCKFGDKCHFAHGE 87 89**********************96 PP
2	zf-CCCH	38.6	1.8e-12	238	263	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt++C +f++ GtC +G+rC+FaHg+ TRIDC2AG068740.2 238 YKTKICENFLK-GTCTFGERCHFAHGE 263 9********.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
ANRSLAPSFS GSTVGCPFGE GCHFAHFVPG GYQAVSKSHS LGHAAVSAPS RAPADHAASG 60 VKTRMCTKYN TAEGCKFGDK CHFAHGEREL GRPPSSYMSQ ESSYAPPMGG RYGGRHEPPP 120 PASMGPPAGN FGASSTCKVS VDAALAGGII GKGGVNTKQI CRITGVKLSI RDHESNPDLK 180 NIELEGSFDQ IKQANDMVRD LIASISASTP SKNPASAAAP AGRGGGGGGG GPGGRSNYKT 240 KICENFLKGT CTFGERCHFA HGETEQRKGA AV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12130.1	4e-50	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG068740.2