PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG054920.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

ARF

Protein Properties

Length: 707aa MW: 75888.4 Da PI: 6.849

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG054920.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	71.3	1.3e-22	124	225	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f k+lt+sd+++ g +++p+ +ae++ ++++ + + ++d +g ++++++iyr++++r++lt+GW++Fv++++L +gD++vF + TRIDC2AG054920.2 124 FAKTLTQSDANNGGGFSVPRFCAETIfppldysSEPPVQ--NIFVKDVHGDEFKFRHIYRGTPRRHLLTTGWSNFVNQKKLLAGDSIVFL--R 212 89*******************999986555555..6********************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 ++++ +v+++r+ TRIDC2AG054920.2 213 SEGGDVHVGIRRA 225 588999**996 PP
2	Auxin_resp	117	1.6e-38	270	353	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+ +++FevvY+Prast+eF+v++ v++a++v++++GmRfkmafetedss++++ +Gtv+g++++dp+rWp+S+Wr+L+ TRIDC2AG054920.2 270 AARLAAAGQPFEVVYYPRASTPEFCVRAGAVRAAMQVQWCPGMRFKMAFETEDSSRISWfMGTVAGIHAADPSRWPQSPWRLLQ 353 678999****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MLTFTELSCP AGGEGAPRSV DPQLWLACAG SMCTVPPVGA AVYYFPQGHA EQAAAAVDLS 60 AARVPALLPC RVSAVRFMAD PQTDEVFAKI RLAPLRQGDP AVDVGDAAAQ GRALQDDRPK 120 PASFAKTLTQ SDANNGGGFS VPRFCAETIF PPLDYSSEPP VQNIFVKDVH GDEFKFRHIY 180 RGTPRRHLLT TGWSNFVNQK KLLAGDSIVF LRSEGGDVHV GIRRAKRVFC DEGHSGWDHY 240 RGLMRGNASS GDGGAAAAKG KVPAEDVVAA ARLAAAGQPF EVVYYPRAST PEFCVRAGAV 300 RAAMQVQWCP GMRFKMAFET EDSSRISWFM GTVAGIHAAD PSRWPQSPWR LLQVTWDEPE 360 LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRIPSYA DFPFEGQLFH PPPPPFPPGH 420 HHQQDQLLHH SFPFFPFPDS NGAPLAGIQG ARHAQFGPSF SDLHLSNLQS SLLYAGGAVR 480 RPAADHVAPR APRTISTDLT IGTSPAREDD TTTTRAPTKK AGGDVVKPAP TLLLFGQAIL 540 TEEQMKSSST GGDAATSPVA GGCGSPNWDA EKAPNLSEGS GSGSGVIQGS PSNNNNTSSW 600 RLQWFGDSSS QAAPELLGLE AGQCKVFVES DAVGRNLDLS ALSSFEELYG RMAEMFGMEC 660 AELRNHVLYR SAAGEVKHIG DEPFSAFVKS ARRLTILTDA GSDNIGG

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MLTFTELSCP AGGEGAPRSV DPQLWLACAG SMCTVPPVGA AVYYFPQGHA EQAAAAVDLS  60
AARVPALLPC RVSAVRFMAD PQTDEVFAKI RLAPLRQGDP AVDVGDAAAQ GRALQDDRPK  120
PASFAKTLTQ SDANNGGGFS VPRFCAETIF PPLDYSSEPP VQNIFVKDVH GDEFKFRHIY  180
RGTPRRHLLT TGWSNFVNQK KLLAGDSIVF LRSEGGDVHV GIRRAKRVFC DEGHSGWDHY  240
RGLMRGNASS GDGGAAAAKG KVPAEDVVAA ARLAAAGQPF EVVYYPRAST PEFCVRAGAV  300
RAAMQVQWCP GMRFKMAFET EDSSRISWFM GTVAGIHAAD PSRWPQSPWR LLQVTWDEPE  360
LLQNVKRVCP WLVELVSSMP NLHLPSFSPP RKKPRIPSYA DFPFEGQLFH PPPPPFPPGH  420
HHQQDQLLHH SFPFFPFPDS NGAPLAGIQG ARHAQFGPSF SDLHLSNLQS SLLYAGGAVR  480
RPAADHVAPR APRTISTDLT IGTSPAREDD TTTTRAPTKK AGGDVVKPAP TLLLFGQAIL  540
TEEQMKSSST GGDAATSPVA GGCGSPNWDA EKAPNLSEGS GSGSGVIQGS PSNNNNTSSW  600
RLQWFGDSSS QAAPELLGLE AGQCKVFVES DAVGRNLDLS ALSSFEELYG RMAEMFGMEC  660
AELRNHVLYR SAAGEVKHIG DEPFSAFVKS ARRLTILTDA GSDNIGG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G30080.1	0.0	ARF family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG054920.2