PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG039030.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 383aa MW: 42036.9 Da PI: 6.9997

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG039030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	92.7	4.2e-29	80	185	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqql 87 +C++C+vlr++C++dC ++p++ p++q++++ +++k++G++ +++l++a ++ r+ +++sl+yeA+ r+ +P+yG+vg++++ ++q+ TRIDC2AG039030.1 80 SCNGCRVLRKGCSEDCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLINAGTDDSlRPGIFRSLLYEACGRIVNPIYGSVGLLWSNNWQM 172 6**************************************************977666****************************** PP DUF260 88 eqlkaelallkee 100 +q+++e++l +++ TRIDC2AG039030.1 173 CQAAVEAVLSGKP 185 ****9987765 PP

Sequence ? help Back to Top
Protein Sequence Length: 383 aa Download sequence
RSQFSQNHWR RPALPSSLYH HNQSLLDCIA HITSIHHHHH HPPLSSPSLS PRRHLLLLGL 60 LACAGSSTYT QGPTTTMRLS CNGCRVLRKG CSEDCSIRPC LQWIKSPEAQ ANATVFLAKF 120 YGRAGLMNLI NAGTDDSLRP GIFRSLLYEA CGRIVNPIYG SVGLLWSNNW QMCQAAVEAV 180 LSGKPIVQVS SEDAAADRTP PLKAYDIRHV STSPAADGRL HKVAKPGRTR FKRASSASSH 240 HNPSSDSNNK PKPKPQPQTR APTAEEELDR QHRKEMEEGA SQRAPSHESS DSRHEDPVEP 300 HCQQEASADT EAEAGSHVSQ AEQEQEQSTE PAAEHAEEVE KEEDEELALE LTLGFAPVAV 360 RPAGFHLSVR TAAEPAFVGL RFL

Sequence ? help Back to Top

Protein Sequence Length: 383 aa Download sequence

RSQFSQNHWR RPALPSSLYH HNQSLLDCIA HITSIHHHHH HPPLSSPSLS PRRHLLLLGL  60
LACAGSSTYT QGPTTTMRLS CNGCRVLRKG CSEDCSIRPC LQWIKSPEAQ ANATVFLAKF  120
YGRAGLMNLI NAGTDDSLRP GIFRSLLYEA CGRIVNPIYG SVGLLWSNNW QMCQAAVEAV  180
LSGKPIVQVS SEDAAADRTP PLKAYDIRHV STSPAADGRL HKVAKPGRTR FKRASSASSH  240
HNPSSDSNNK PKPKPQPQTR APTAEEELDR QHRKEMEEGA SQRAPSHESS DSRHEDPVEP  300
HCQQEASADT EAEAGSHVSQ AEQEQEQSTE PAAEHAEEVE KEEDEELALE LTLGFAPVAV  360
RPAGFHLSVR TAAEPAFVGL RFL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	4e-78	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG039030.1