PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG038290.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 552aa MW: 58879.6 Da PI: 7.1917

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG038290.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.9	1e-12	270	326	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g rk + g ++ +e+Aa+a+++a++k++g TRIDC2AG038290.1 270 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDQAALKYWG 326 78*****************77776664346655.77****************98 PP
2	AP2	51.9	1.9e-16	371	420	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I +s +k +lg+fgt eeAa+a++ a+ k++g TRIDC2AG038290.1 371 YRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 420 9*************999754...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 552 aa Download sequence
MTNNNGNGNG GSNAAASGWL GFSLSPHMDE HNHVQQQQQQ HQGLFYPSSV AAAYSLGSDV 60 ATGGYYSQLA SMPLKSDGSL CIMEALRRTD QQDHHGTYFI TGSPKLEDFL GAGQPAMALS 120 LDNTSNFYYY SGGGGAGGQH GQSHGGGFLQ QAYDVYGGPA TASVLAADED AAAATAMANW 180 VQVARGATAY ATAENVLSAA ADRQQHLHHH PLALSMSSAG SLSSCVTAGA EYGGVVATVD 240 GGRKRGGATA GQKQPVHHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR 300 KGRQGGYDME EKAARAYDQA ALKYWGPSTH INFPLEDYQQ ELEEMKNMTR QEYVAHLRRK 360 SSGFSRGASM YRGVTRHHQH GRWQARIGRV SGNKDLYLGT FGTQEEAAEA YDIAAIKFRG 420 LNAVTNFDIT RYDVDKIMAS NTLLPGELAR RNKDANAAPL PLPAPDDCAA SALVPVSTPG 480 TDTGGSGQHR NQDVMSSGEA FSALHDLVTV DGHTAQGGNG ARVHMSMSGA SSLVTSLSNS 540 REESPDRGGG LS

Sequence ? help Back to Top

Protein Sequence Length: 552 aa Download sequence

MTNNNGNGNG GSNAAASGWL GFSLSPHMDE HNHVQQQQQQ HQGLFYPSSV AAAYSLGSDV  60
ATGGYYSQLA SMPLKSDGSL CIMEALRRTD QQDHHGTYFI TGSPKLEDFL GAGQPAMALS  120
LDNTSNFYYY SGGGGAGGQH GQSHGGGFLQ QAYDVYGGPA TASVLAADED AAAATAMANW  180
VQVARGATAY ATAENVLSAA ADRQQHLHHH PLALSMSSAG SLSSCVTAGA EYGGVVATVD  240
GGRKRGGATA GQKQPVHHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR  300
KGRQGGYDME EKAARAYDQA ALKYWGPSTH INFPLEDYQQ ELEEMKNMTR QEYVAHLRRK  360
SSGFSRGASM YRGVTRHHQH GRWQARIGRV SGNKDLYLGT FGTQEEAAEA YDIAAIKFRG  420
LNAVTNFDIT RYDVDKIMAS NTLLPGELAR RNKDANAAPL PLPAPDDCAA SALVPVSTPG  480
TDTGGSGQHR NQDVMSSGEA FSALHDLVTV DGHTAQGGNG ARVHMSMSGA SSLVTSLSNS  540
REESPDRGGG LS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-123	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG038290.1