PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC2AG024650.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HRT-like

Protein Properties

Length: 591aa MW: 64079.2 Da PI: 9.6412

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC2AG024650.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55.1	1.2e-17	345	375	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGv+ledGs C + P +gRKRCe HKG+R+ TRIDC2AG024650.1 345 VCGVMLEDGSSCLEDPLEGRKRCELHKGRRV 375 7*****************************7 PP
2	HRT-like	28.3	3e-09	506	532	1	28
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKG 28 iCG+ +++G Ck Pv gR RCeeH G TRIDC2AG024650.1 506 ICGAVTDNG-YCKLAPVAGRERCEEHRG 532 8*****9.6*************98 PP
3	HRT-like	52.1	1.1e-16	552	581	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CG++ +dGs+Ck+qP+ gRKRC+ HKG+R TRIDC2AG024650.1 552 VCGARASDGSPCKNQPIAGRKRCALHKGQR 581 7****************************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 591 aa Download sequence
KFQIRPGFSK DDSPSPGGDA TGGGAEPTCQ TPESTLGKGG LAMPLVAAAR LKREDCPRTK 60 HDSLFSPWKV LVGPSDWEDH SAGKEGVQRY HTRNLPDNFP GLYELGVARP SYDGVRARRN 120 RSVVVVVVYL GQADNVRARL QQYGRTGSHL DAGNPLATVG KAEVNTFTAG PGLFREVFSR 180 GYSVMFRCAL MGSKKAAEKT EAQLLGVFDY AWNKLQNGAC RREEILLKLE QGSHRLSLLG 240 RVRHLKQRVF GEKAGIKINS TGSVEISSGS MKNMLPRVRT FVGFRPRLVN SGDDLNEAID 300 IHRKCTPQAN TAGNKQAHRR SEGYKVKKVD VIERRTAPIR EAEAVCGVML EDGSSCLEDP 360 LEGRKRCELH KGRRVRVAYS HKVSSSSSTC PVAIPTVESI PQQTANPSKP DQAWQTSADQ 420 SKNLSTNAKE PSLQRSSLEA KEMKIGEAPT EDEAYGTSHA ESQFHQDEPV GRKWFELLKA 480 QKSASAPSLR GQGCQTREAN DNASAICGAV TDNGYCKLAP VAGRERCEEH RGIEVTGASS 540 APCSGRSGWP SVCGARASDG SPCKNQPIAG RKRCALHKGQ RACCASTPSV K

Sequence ? help Back to Top

Protein Sequence Length: 591 aa Download sequence

KFQIRPGFSK DDSPSPGGDA TGGGAEPTCQ TPESTLGKGG LAMPLVAAAR LKREDCPRTK  60
HDSLFSPWKV LVGPSDWEDH SAGKEGVQRY HTRNLPDNFP GLYELGVARP SYDGVRARRN  120
RSVVVVVVYL GQADNVRARL QQYGRTGSHL DAGNPLATVG KAEVNTFTAG PGLFREVFSR  180
GYSVMFRCAL MGSKKAAEKT EAQLLGVFDY AWNKLQNGAC RREEILLKLE QGSHRLSLLG  240
RVRHLKQRVF GEKAGIKINS TGSVEISSGS MKNMLPRVRT FVGFRPRLVN SGDDLNEAID  300
IHRKCTPQAN TAGNKQAHRR SEGYKVKKVD VIERRTAPIR EAEAVCGVML EDGSSCLEDP  360
LEGRKRCELH KGRRVRVAYS HKVSSSSSTC PVAIPTVESI PQQTANPSKP DQAWQTSADQ  420
SKNLSTNAKE PSLQRSSLEA KEMKIGEAPT EDEAYGTSHA ESQFHQDEPV GRKWFELLKA  480
QKSASAPSLR GQGCQTREAN DNASAICGAV TDNGYCKLAP VAGRERCEEH RGIEVTGASS  540
APCSGRSGWP SVCGARASDG SPCKNQPIAG RKRCALHKGQ RACCASTPSV K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	4e-62	HRT-like family protein

Link Out ? help Back to Top
Ensembl	TRIDC2AG024650.1