PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG074670.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 1244aa MW: 137254 Da PI: 4.3691

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG074670.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	744	766	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.9 744 NCPSYMSKGTCTYGPSCHFNHPP 766 7********************96 PP
2	zf-CCCH	35.2	2.1e-11	804	826	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ TRIDC1BG074670.9 804 RNCDYYMRTGACRYGKNCHFNHP 826 79********************9 PP
3	zf-CCCH	27.6	4.9e-09	1004	1029	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++r+G Ck+ + C+++H++ TRIDC1BG074670.9 1004 GKPDCPFYMRFGDCKFASACNYHHPK 1029 7899********************96 PP
4	zf-CCCH	27.2	6.6e-09	1038	1063	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck ++CkF H++ TRIDC1BG074670.9 1038 DEPECPFLMKRGYCKLRAQCKFYHPE 1063 689*********************96 PP
5	zf-CCCH	19.5	1.7e-06	1102	1128	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ TRIDC1BG074670.9 1102 PGQPECRYYLQFGKCKYLSACIFHHPK 1128 5789*********************96 PP
6	zf-CCCH	29.3	1.5e-09	1140	1166	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++ G C++G+ C F H++ TRIDC1BG074670.9 1140 PGMPDCPFYMKAGKCQFGSACEFRHPK 1166 5789*********************96 PP
7	zf-CCCH	19	2.5e-06	1210	1235	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G+Ck+ +Ck++H+ TRIDC1BG074670.9 1210 PGEPECNHYMRQGYCKFQMNCKYHHP 1235 5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1244 aa Download sequence
RHHQDHDQEQ DQAAPAHAPR AKRALHLLPQ TPTTSPSLAP SAAAAAHAHG LGFSTQDQDG 60 YDAVAVEGQE VLEQGGVVAA GIIGQGTQDA TAVAVAVALD DDDQEKKPLG QCTSTTSSYC 120 EELRTTTMET DVAKDDQEAV EQGVIVEQEG APMDDAIAVD DDDQEEKPLE QSSTTYGDLG 180 TAMENDAAAA AVQVQEQVVE QQDATQPRDE DTAAEGQETP GAHQPGSTEN ADDAVQVQEE 240 GETADATAVH DHDKAVEQCT TADDLGTTME NDVAKDDQEV LEQGVIDQGD ASTIDAVKDH 300 EVLLLGAVEG TRATTDGIAA VEDQGKNVEQ CTTYSDLGTT MKNDDAVDDK QVVKQGAVDL 360 TMDDDASVEE QEVVEQGVVD LTMDDDASVE EQEVVEEGVV DLTMDDDASV EEQEVVEEGV 420 VDLTMDDDDS VKHHKQQGII DGTDDIAVEK QEKVLEQCSR ATTDQYTVRE KEMVVEQGVI 480 DPKYMDLATE DQVKLSIIDD HGTVPMDNIV VKDQDKAVVQ YASDAIVTIK DESPVEEHDT 540 VGNQGVIDKN GRTKDDIDVE GHGYVNEQVI VDNWGTSSDA TALEGQKNEA EPRIGDEQIA 600 GKDMDGVHAE GNMLEQRTSD KQGATQSDFT VDKHKDVAEC VRHEWGAPED DLAMDRTAYQ 660 GTRDWGIVNK EKVKLPADDR AMDTAAYQGT GDWGIVNKDK VKLPEDDRAM DTAAYQGTGD 720 WGIVSKEKYT LPARRYPQKP RKLNCPSYMS KGTCTYGPSC HFNHPPQLKS RSDESWRPSE 780 RRNHGAAEIL ELNRLGLPIR EGARNCDYYM RTGACRYGKN CHFNHPDHVI DAQFSPPTGW 840 EDNALQMEKS SDHTLDETSR MKKSSDGATF DDRSHMKKSS DDATLDDRSH LKKPSDGAIV 900 DDTSYSKKSS DHENSSSSGV LPPSIFRMLL PPQKVLPGTE GKAKKKSDWS SDDSDGCCSA 960 DSSDGPLCKQ GEHVDYPERP GRPEYHRPKQ SKYKEEVNYP ERPGKPDCPF YMRFGDCKFA 1020 SACNYHHPKD KYPAGRPDEP ECPFLMKRGY CKLRAQCKFY HPEASSPTDA KRSVTTDEHH 1080 PSTRTTLQDY MLPQQPQYPE RPGQPECRYY LQFGKCKYLS ACIFHHPKDR LAAHSDQIGP 1140 GMPDCPFYMK AGKCQFGSAC EFRHPKDIHS SSTAEEAFDK RSGSGAYDSL TRSDNGVEQQ 1200 EESIMYPERP GEPECNHYMR QGYCKFQMNC KYHHPGDRLS KKQY

Sequence ? help Back to Top

Protein Sequence Length: 1244 aa Download sequence

RHHQDHDQEQ DQAAPAHAPR AKRALHLLPQ TPTTSPSLAP SAAAAAHAHG LGFSTQDQDG  60
YDAVAVEGQE VLEQGGVVAA GIIGQGTQDA TAVAVAVALD DDDQEKKPLG QCTSTTSSYC  120
EELRTTTMET DVAKDDQEAV EQGVIVEQEG APMDDAIAVD DDDQEEKPLE QSSTTYGDLG  180
TAMENDAAAA AVQVQEQVVE QQDATQPRDE DTAAEGQETP GAHQPGSTEN ADDAVQVQEE  240
GETADATAVH DHDKAVEQCT TADDLGTTME NDVAKDDQEV LEQGVIDQGD ASTIDAVKDH  300
EVLLLGAVEG TRATTDGIAA VEDQGKNVEQ CTTYSDLGTT MKNDDAVDDK QVVKQGAVDL  360
TMDDDASVEE QEVVEQGVVD LTMDDDASVE EQEVVEEGVV DLTMDDDASV EEQEVVEEGV  420
VDLTMDDDDS VKHHKQQGII DGTDDIAVEK QEKVLEQCSR ATTDQYTVRE KEMVVEQGVI  480
DPKYMDLATE DQVKLSIIDD HGTVPMDNIV VKDQDKAVVQ YASDAIVTIK DESPVEEHDT  540
VGNQGVIDKN GRTKDDIDVE GHGYVNEQVI VDNWGTSSDA TALEGQKNEA EPRIGDEQIA  600
GKDMDGVHAE GNMLEQRTSD KQGATQSDFT VDKHKDVAEC VRHEWGAPED DLAMDRTAYQ  660
GTRDWGIVNK EKVKLPADDR AMDTAAYQGT GDWGIVNKDK VKLPEDDRAM DTAAYQGTGD  720
WGIVSKEKYT LPARRYPQKP RKLNCPSYMS KGTCTYGPSC HFNHPPQLKS RSDESWRPSE  780
RRNHGAAEIL ELNRLGLPIR EGARNCDYYM RTGACRYGKN CHFNHPDHVI DAQFSPPTGW  840
EDNALQMEKS SDHTLDETSR MKKSSDGATF DDRSHMKKSS DDATLDDRSH LKKPSDGAIV  900
DDTSYSKKSS DHENSSSSGV LPPSIFRMLL PPQKVLPGTE GKAKKKSDWS SDDSDGCCSA  960
DSSDGPLCKQ GEHVDYPERP GRPEYHRPKQ SKYKEEVNYP ERPGKPDCPF YMRFGDCKFA  1020
SACNYHHPKD KYPAGRPDEP ECPFLMKRGY CKLRAQCKFY HPEASSPTDA KRSVTTDEHH  1080
PSTRTTLQDY MLPQQPQYPE RPGQPECRYY LQFGKCKYLS ACIFHHPKDR LAAHSDQIGP  1140
GMPDCPFYMK AGKCQFGSAC EFRHPKDIHS SSTAEEAFDK RSGSGAYDSL TRSDNGVEQQ  1200
EESIMYPERP GEPECNHYMR QGYCKFQMNC KYHHPGDRLS KKQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-42	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG074670.9