PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG074670.8

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 1255aa MW: 138298 Da PI: 4.3776

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG074670.8	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	747	769	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.8 747 NCPSYMSKGTCTYGPSCHFNHPP 769 7********************96 PP
2	zf-CCCH	35.2	2.1e-11	806	828	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ TRIDC1BG074670.8 806 RNCDYYMRTGACRYGKNCHFNHP 828 79********************9 PP
3	zf-CCCH	27.6	4.9e-09	1006	1031	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++r+G Ck+ + C+++H++ TRIDC1BG074670.8 1006 GKPDCPFYMRFGDCKFASACNYHHPK 1031 7899********************96 PP
4	zf-CCCH	27.2	6.6e-09	1040	1065	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck ++CkF H++ TRIDC1BG074670.8 1040 DEPECPFLMKRGYCKLRAQCKFYHPE 1065 689*********************96 PP
5	zf-CCCH	19.5	1.7e-06	1104	1130	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ TRIDC1BG074670.8 1104 PGQPECRYYLQFGKCKYLSACIFHHPK 1130 5789*********************96 PP
6	zf-CCCH	29.3	1.5e-09	1142	1168	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++ G C++G+ C F H++ TRIDC1BG074670.8 1142 PGMPDCPFYMKAGKCQFGSACEFRHPK 1168 5789*********************96 PP
7	zf-CCCH	19	2.6e-06	1212	1237	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G+Ck+ +Ck++H+ TRIDC1BG074670.8 1212 PGEPECNHYMRQGYCKFQMNCKYHHP 1237 5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1255 aa Download sequence
SLLRHHQDHD QEQDQAAPAH APRAKRALHL LPQTPTTSPS LAPSAAAAAH AHGLGFSTQD 60 QDGYDAVAVE GQEVLEQGGV VAAGIIGQGT QDATAVAVAV ALDDDDQEKK PLGQCTSTTS 120 SYCEELRTTT METDVAKDDQ EAVEQGVIVE QEGAPMDDAI AVDDDDQEEK PLEQSSTTYG 180 DLGTAMENDA AAAAVQVQEQ VVEQQDATQP RDEDTAAEGQ ETPGAHQPGS TENADDAVQV 240 QEEGETADAT AVHDHDKAVE QCTTADDLGT TMENDVAKDD QEVLEQGVID QGDASTIDAV 300 KDHEVLLLGA VEGTRATTDG IAAVEDQGKN VEQCTTYSDL GTTMKNDDAV DDKQVVKQGA 360 VDLTMDDDAS VEEQEVVEQG VVDLTMDDDA SVEEQEVVEE GVVDLTMDDD ASVEEQEVVE 420 EGVVDLTMDD DDSVKHHKQQ GIIDGTDDIA VEKQEKVLEQ CSRATTDQYT VREKEMVVEQ 480 GVIDPKYMDL ATEDQVKLSI IDDHGTVPMD NIVVKDQDKA VVQYASDAIV TIKDESPVEE 540 HDTVGNQGVI DKNGRTKDDI DVEGHGYVNE QVIVDNWGTS SDATALEGQK NEAEPRIGDE 600 QIAGKDMDGV HAEGNMLEQR TSDKQGATQS DFTVDKHKDV AECVRHEWGA PEDDLAMDRT 660 AYQGTRDWGI VNKEKVKLPA DDRAMDTAAY QGTGDWGIVN KDKVKLPEDD RAMDTAAYQG 720 TGDWGIVSKE KYTLPARRYP QKPRKLNCPS YMSKGTCTYG PSCHFNHPPL KSRSDESWRP 780 SERRNHGAAE ILELNRLGLP IREGARNCDY YMRTGACRYG KNCHFNHPDH VIDAQFSPPT 840 GWEDNALQME KSSDHTLDET SRMKKSSDGA TFDDRSHMKK SSDDATLDDR SHLKKPSDGA 900 IVDDTSYSKK SSDHENSSSS GVLPPSIFRM LLPPQKVLPG TEGKAKKKSD WSSDDSDGCC 960 SADSSDGPLC KQGEHVDYPE RPGRPEYHRP KQSKYKEEVN YPERPGKPDC PFYMRFGDCK 1020 FASACNYHHP KDKYPAGRPD EPECPFLMKR GYCKLRAQCK FYHPEASSPT DAKRSVTTDE 1080 HHPSTRTTLQ DYMLPQQPQY PERPGQPECR YYLQFGKCKY LSACIFHHPK DRLAAHSDQI 1140 GPGMPDCPFY MKAGKCQFGS ACEFRHPKDI HSSSTAEEAF DKRSGSGAYD SLTRSDNGVE 1200 QQEESIMYPE RPGEPECNHY MRQGYCKFQM NCKYHHPGDR LSKKQYVLKS SAATT

Sequence ? help Back to Top

Protein Sequence Length: 1255 aa Download sequence

SLLRHHQDHD QEQDQAAPAH APRAKRALHL LPQTPTTSPS LAPSAAAAAH AHGLGFSTQD  60
QDGYDAVAVE GQEVLEQGGV VAAGIIGQGT QDATAVAVAV ALDDDDQEKK PLGQCTSTTS  120
SYCEELRTTT METDVAKDDQ EAVEQGVIVE QEGAPMDDAI AVDDDDQEEK PLEQSSTTYG  180
DLGTAMENDA AAAAVQVQEQ VVEQQDATQP RDEDTAAEGQ ETPGAHQPGS TENADDAVQV  240
QEEGETADAT AVHDHDKAVE QCTTADDLGT TMENDVAKDD QEVLEQGVID QGDASTIDAV  300
KDHEVLLLGA VEGTRATTDG IAAVEDQGKN VEQCTTYSDL GTTMKNDDAV DDKQVVKQGA  360
VDLTMDDDAS VEEQEVVEQG VVDLTMDDDA SVEEQEVVEE GVVDLTMDDD ASVEEQEVVE  420
EGVVDLTMDD DDSVKHHKQQ GIIDGTDDIA VEKQEKVLEQ CSRATTDQYT VREKEMVVEQ  480
GVIDPKYMDL ATEDQVKLSI IDDHGTVPMD NIVVKDQDKA VVQYASDAIV TIKDESPVEE  540
HDTVGNQGVI DKNGRTKDDI DVEGHGYVNE QVIVDNWGTS SDATALEGQK NEAEPRIGDE  600
QIAGKDMDGV HAEGNMLEQR TSDKQGATQS DFTVDKHKDV AECVRHEWGA PEDDLAMDRT  660
AYQGTRDWGI VNKEKVKLPA DDRAMDTAAY QGTGDWGIVN KDKVKLPEDD RAMDTAAYQG  720
TGDWGIVSKE KYTLPARRYP QKPRKLNCPS YMSKGTCTYG PSCHFNHPPL KSRSDESWRP  780
SERRNHGAAE ILELNRLGLP IREGARNCDY YMRTGACRYG KNCHFNHPDH VIDAQFSPPT  840
GWEDNALQME KSSDHTLDET SRMKKSSDGA TFDDRSHMKK SSDDATLDDR SHLKKPSDGA  900
IVDDTSYSKK SSDHENSSSS GVLPPSIFRM LLPPQKVLPG TEGKAKKKSD WSSDDSDGCC  960
SADSSDGPLC KQGEHVDYPE RPGRPEYHRP KQSKYKEEVN YPERPGKPDC PFYMRFGDCK  1020
FASACNYHHP KDKYPAGRPD EPECPFLMKR GYCKLRAQCK FYHPEASSPT DAKRSVTTDE  1080
HHPSTRTTLQ DYMLPQQPQY PERPGQPECR YYLQFGKCKY LSACIFHHPK DRLAAHSDQI  1140
GPGMPDCPFY MKAGKCQFGS ACEFRHPKDI HSSSTAEEAF DKRSGSGAYD SLTRSDNGVE  1200
QQEESIMYPE RPGEPECNHY MRQGYCKFQM NCKYHHPGDR LSKKQYVLKS SAATT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-42	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG074670.8