PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | TRIDC1BG074670.7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 1272aa MW: 140420 Da PI: 4.4115 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.6 | 1e-08 | 747 | 769 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.7 747 NCPSYMSKGTCTYGPSCHFNHPP 769 7********************96 PP | |||||||
2 | zf-CCCH | 35.2 | 2.1e-11 | 806 | 828 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ TRIDC1BG074670.7 806 RNCDYYMRTGACRYGKNCHFNHP 828 79********************9 PP | |||||||
3 | zf-CCCH | 27.6 | 5e-09 | 1006 | 1031 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++r+G Ck+ + C+++H++ TRIDC1BG074670.7 1006 GKPDCPFYMRFGDCKFASACNYHHPK 1031 7899********************96 PP | |||||||
4 | zf-CCCH | 27.2 | 6.7e-09 | 1040 | 1065 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck ++CkF H++ TRIDC1BG074670.7 1040 DEPECPFLMKRGYCKLRAQCKFYHPE 1065 689*********************96 PP | |||||||
5 | zf-CCCH | 19.5 | 1.7e-06 | 1104 | 1130 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ TRIDC1BG074670.7 1104 PGQPECRYYLQFGKCKYLSACIFHHPK 1130 5789*********************96 PP | |||||||
6 | zf-CCCH | 29.3 | 1.5e-09 | 1142 | 1168 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++ G C++G+ C F H++ TRIDC1BG074670.7 1142 PGMPDCPFYMKAGKCQFGSACEFRHPK 1168 5789*********************96 PP | |||||||
7 | zf-CCCH | 18.9 | 2.6e-06 | 1212 | 1237 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G+Ck+ +Ck++H+ TRIDC1BG074670.7 1212 PGEPECNHYMRQGYCKFQMNCKYHHP 1237 5799*********************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1272 aa Download sequence |
SLLRHHQDHD QEQDQAAPAH APRAKRALHL LPQTPTTSPS LAPSAAAAAH AHGLGFSTQD 60 QDGYDAVAVE GQEVLEQGGV VAAGIIGQGT QDATAVAVAV ALDDDDQEKK PLGQCTSTTS 120 SYCEELRTTT METDVAKDDQ EAVEQGVIVE QEGAPMDDAI AVDDDDQEEK PLEQSSTTYG 180 DLGTAMENDA AAAAVQVQEQ VVEQQDATQP RDEDTAAEGQ ETPGAHQPGS TENADDAVQV 240 QEEGETADAT AVHDHDKAVE QCTTADDLGT TMENDVAKDD QEVLEQGVID QGDASTIDAV 300 KDHEVLLLGA VEGTRATTDG IAAVEDQGKN VEQCTTYSDL GTTMKNDDAV DDKQVVKQGA 360 VDLTMDDDAS VEEQEVVEQG VVDLTMDDDA SVEEQEVVEE GVVDLTMDDD ASVEEQEVVE 420 EGVVDLTMDD DDSVKHHKQQ GIIDGTDDIA VEKQEKVLEQ CSRATTDQYT VREKEMVVEQ 480 GVIDPKYMDL ATEDQVKLSI IDDHGTVPMD NIVVKDQDKA VVQYASDAIV TIKDESPVEE 540 HDTVGNQGVI DKNGRTKDDI DVEGHGYVNE QVIVDNWGTS SDATALEGQK NEAEPRIGDE 600 QIAGKDMDGV HAEGNMLEQR TSDKQGATQS DFTVDKHKDV AECVRHEWGA PEDDLAMDRT 660 AYQGTRDWGI VNKEKVKLPA DDRAMDTAAY QGTGDWGIVN KDKVKLPEDD RAMDTAAYQG 720 TGDWGIVSKE KYTLPARRYP QKPRKLNCPS YMSKGTCTYG PSCHFNHPPL KSRSDESWRP 780 SERRNHGAAE ILELNRLGLP IREGARNCDY YMRTGACRYG KNCHFNHPDH VIDAQFSPPT 840 GWEDNALQME KSSDHTLDET SRMKKSSDGA TFDDRSHMKK SSDDATLDDR SHLKKPSDGA 900 IVDDTSYSKK SSDHENSSSS GVLPPSIFRM LLPPQKVLPG TEGKAKKKSD WSSDDSDGCC 960 SADSSDGPLC KQGEHVDYPE RPGRPEYHRP KQSKYKEEVN YPERPGKPDC PFYMRFGDCK 1020 FASACNYHHP KDKYPAGRPD EPECPFLMKR GYCKLRAQCK FYHPEASSPT DAKRSVTTDE 1080 HHPSTRTTLQ DYMLPQQPQY PERPGQPECR YYLQFGKCKY LSACIFHHPK DRLAAHSDQI 1140 GPGMPDCPFY MKAGKCQFGS ACEFRHPKDI HSSSTAEEAF DKRSGSGAYD SLTRSDNGVE 1200 QQEESIMYPE RPGEPECNHY MRQGYCKFQM NCKYHHPGDR LSKKHEVIRS DHLSKAGTRW 1260 LPHECYQQKA LS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G12680.1 | 1e-42 | C3H family protein |
Link Out ? help Back to Top | |
---|---|
Ensembl | TRIDC1BG074670.7 |