PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG074670.5

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 1257aa MW: 138497 Da PI: 4.3776

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG074670.5	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	748	770	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.5 748 NCPSYMSKGTCTYGPSCHFNHPP 770 7********************96 PP
2	zf-CCCH	35.2	2.1e-11	808	830	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ TRIDC1BG074670.5 808 RNCDYYMRTGACRYGKNCHFNHP 830 79********************9 PP
3	zf-CCCH	27.6	4.9e-09	1008	1033	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++r+G Ck+ + C+++H++ TRIDC1BG074670.5 1008 GKPDCPFYMRFGDCKFASACNYHHPK 1033 7899********************96 PP
4	zf-CCCH	27.2	6.7e-09	1042	1067	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck ++CkF H++ TRIDC1BG074670.5 1042 DEPECPFLMKRGYCKLRAQCKFYHPE 1067 689*********************96 PP
5	zf-CCCH	19.5	1.7e-06	1106	1132	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ TRIDC1BG074670.5 1106 PGQPECRYYLQFGKCKYLSACIFHHPK 1132 5789*********************96 PP
6	zf-CCCH	29.3	1.5e-09	1144	1170	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++ G C++G+ C F H++ TRIDC1BG074670.5 1144 PGMPDCPFYMKAGKCQFGSACEFRHPK 1170 5789*********************96 PP
7	zf-CCCH	19	2.6e-06	1214	1239	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G+Ck+ +Ck++H+ TRIDC1BG074670.5 1214 PGEPECNHYMRQGYCKFQMNCKYHHP 1239 5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1257 aa Download sequence
ASLLRHHQDH DQEQDQAAPA HAPRAKRALH LLPQTPTTSP SLAPSAAAAA HAHGLGFSTQ 60 DQDGYDAVAV EGQEVLEQGG VVAAGIIGQG TQDATAVAVA VALDDDDQEK KPLGQCTSTT 120 SSYCEELRTT TMETDVAKDD QEAVEQGVIV EQEGAPMDDA IAVDDDDQEE KPLEQSSTTY 180 GDLGTAMEND AAAAAVQVQE QVVEQQDATQ PRDEDTAAEG QETPGAHQPG STENADDAVQ 240 VQEEGETADA TAVHDHDKAV EQCTTADDLG TTMENDVAKD DQEVLEQGVI DQGDASTIDA 300 VKDHEVLLLG AVEGTRATTD GIAAVEDQGK NVEQCTTYSD LGTTMKNDDA VDDKQVVKQG 360 AVDLTMDDDA SVEEQEVVEQ GVVDLTMDDD ASVEEQEVVE EGVVDLTMDD DASVEEQEVV 420 EEGVVDLTMD DDDSVKHHKQ QGIIDGTDDI AVEKQEKVLE QCSRATTDQY TVREKEMVVE 480 QGVIDPKYMD LATEDQVKLS IIDDHGTVPM DNIVVKDQDK AVVQYASDAI VTIKDESPVE 540 EHDTVGNQGV IDKNGRTKDD IDVEGHGYVN EQVIVDNWGT SSDATALEGQ KNEAEPRIGD 600 EQIAGKDMDG VHAEGNMLEQ RTSDKQGATQ SDFTVDKHKD VAECVRHEWG APEDDLAMDR 660 TAYQGTRDWG IVNKEKVKLP ADDRAMDTAA YQGTGDWGIV NKDKVKLPED DRAMDTAAYQ 720 GTGDWGIVSK EKYTLPARRY PQKPRKLNCP SYMSKGTCTY GPSCHFNHPP QLKSRSDESW 780 RPSERRNHGA AEILELNRLG LPIREGARNC DYYMRTGACR YGKNCHFNHP DHVIDAQFSP 840 PTGWEDNALQ MEKSSDHTLD ETSRMKKSSD GATFDDRSHM KKSSDDATLD DRSHLKKPSD 900 GAIVDDTSYS KKSSDHENSS SSGVLPPSIF RMLLPPQKVL PGTEGKAKKK SDWSSDDSDG 960 CCSADSSDGP LCKQGEHVDY PERPGRPEYH RPKQSKYKEE VNYPERPGKP DCPFYMRFGD 1020 CKFASACNYH HPKDKYPAGR PDEPECPFLM KRGYCKLRAQ CKFYHPEASS PTDAKRSVTT 1080 DEHHPSTRTT LQDYMLPQQP QYPERPGQPE CRYYLQFGKC KYLSACIFHH PKDRLAAHSD 1140 QIGPGMPDCP FYMKAGKCQF GSACEFRHPK DIHSSSTAEE AFDKRSGSGA YDSLTRSDNG 1200 VEQQEESIMY PERPGEPECN HYMRQGYCKF QMNCKYHHPG DRLSKKQYVL KSSAATT

Sequence ? help Back to Top

Protein Sequence Length: 1257 aa Download sequence

ASLLRHHQDH DQEQDQAAPA HAPRAKRALH LLPQTPTTSP SLAPSAAAAA HAHGLGFSTQ  60
DQDGYDAVAV EGQEVLEQGG VVAAGIIGQG TQDATAVAVA VALDDDDQEK KPLGQCTSTT  120
SSYCEELRTT TMETDVAKDD QEAVEQGVIV EQEGAPMDDA IAVDDDDQEE KPLEQSSTTY  180
GDLGTAMEND AAAAAVQVQE QVVEQQDATQ PRDEDTAAEG QETPGAHQPG STENADDAVQ  240
VQEEGETADA TAVHDHDKAV EQCTTADDLG TTMENDVAKD DQEVLEQGVI DQGDASTIDA  300
VKDHEVLLLG AVEGTRATTD GIAAVEDQGK NVEQCTTYSD LGTTMKNDDA VDDKQVVKQG  360
AVDLTMDDDA SVEEQEVVEQ GVVDLTMDDD ASVEEQEVVE EGVVDLTMDD DASVEEQEVV  420
EEGVVDLTMD DDDSVKHHKQ QGIIDGTDDI AVEKQEKVLE QCSRATTDQY TVREKEMVVE  480
QGVIDPKYMD LATEDQVKLS IIDDHGTVPM DNIVVKDQDK AVVQYASDAI VTIKDESPVE  540
EHDTVGNQGV IDKNGRTKDD IDVEGHGYVN EQVIVDNWGT SSDATALEGQ KNEAEPRIGD  600
EQIAGKDMDG VHAEGNMLEQ RTSDKQGATQ SDFTVDKHKD VAECVRHEWG APEDDLAMDR  660
TAYQGTRDWG IVNKEKVKLP ADDRAMDTAA YQGTGDWGIV NKDKVKLPED DRAMDTAAYQ  720
GTGDWGIVSK EKYTLPARRY PQKPRKLNCP SYMSKGTCTY GPSCHFNHPP QLKSRSDESW  780
RPSERRNHGA AEILELNRLG LPIREGARNC DYYMRTGACR YGKNCHFNHP DHVIDAQFSP  840
PTGWEDNALQ MEKSSDHTLD ETSRMKKSSD GATFDDRSHM KKSSDDATLD DRSHLKKPSD  900
GAIVDDTSYS KKSSDHENSS SSGVLPPSIF RMLLPPQKVL PGTEGKAKKK SDWSSDDSDG  960
CCSADSSDGP LCKQGEHVDY PERPGRPEYH RPKQSKYKEE VNYPERPGKP DCPFYMRFGD  1020
CKFASACNYH HPKDKYPAGR PDEPECPFLM KRGYCKLRAQ CKFYHPEASS PTDAKRSVTT  1080
DEHHPSTRTT LQDYMLPQQP QYPERPGQPE CRYYLQFGKC KYLSACIFHH PKDRLAAHSD  1140
QIGPGMPDCP FYMKAGKCQF GSACEFRHPK DIHSSSTAEE AFDKRSGSGA YDSLTRSDNG  1200
VEQQEESIMY PERPGEPECN HYMRQGYCKF QMNCKYHHPG DRLSKKQYVL KSSAATT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-42	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG074670.5