PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG074670.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 1254aa MW: 138082 Da PI: 4.3691

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG074670.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1e-08	755	777	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.3 755 NCPSYMSKGTCTYGPSCHFNHPP 777 7********************96 PP
2	zf-CCCH	35.2	2.1e-11	814	836	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ TRIDC1BG074670.3 814 RNCDYYMRTGACRYGKNCHFNHP 836 79********************9 PP
3	zf-CCCH	27.6	4.9e-09	1014	1039	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++r+G Ck+ + C+++H++ TRIDC1BG074670.3 1014 GKPDCPFYMRFGDCKFASACNYHHPK 1039 7899********************96 PP
4	zf-CCCH	27.2	6.6e-09	1048	1073	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck ++CkF H++ TRIDC1BG074670.3 1048 DEPECPFLMKRGYCKLRAQCKFYHPE 1073 689*********************96 PP
5	zf-CCCH	19.5	1.7e-06	1112	1138	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ TRIDC1BG074670.3 1112 PGQPECRYYLQFGKCKYLSACIFHHPK 1138 5789*********************96 PP
6	zf-CCCH	29.3	1.5e-09	1150	1176	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++ G C++G+ C F H++ TRIDC1BG074670.3 1150 PGMPDCPFYMKAGKCQFGSACEFRHPK 1176 5789*********************96 PP
7	zf-CCCH	19	2.6e-06	1220	1245	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G+Ck+ +Ck++H+ TRIDC1BG074670.3 1220 PGEPECNHYMRQGYCKFQMNCKYHHP 1245 5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1254 aa Download sequence
PASASASASL LRHHQDHDQE QDQAAPAHAP RAKRALHLLP QTPTTSPSLA PSAAAAAHAH 60 GLGFSTQDQD GYDAVAVEGQ EVLEQGGVVA AGIIGQGTQD ATAVAVAVAL DDDDQEKKPL 120 GQCTSTTSSY CEELRTTTME TDVAKDDQEA VEQGVIVEQE GAPMDDAIAV DDDDQEEKPL 180 EQSSTTYGDL GTAMENDAAA AAVQVQEQVV EQQDATQPRD EDTAAEGQET PGAHQPGSTE 240 NADDAVQVQE EGETADATAV HDHDKAVEQC TTADDLGTTM ENDVAKDDQE VLEQGVIDQG 300 DASTIDAVKD HEVLLLGAVE GTRATTDGIA AVEDQGKNVE QCTTYSDLGT TMKNDDAVDD 360 KQVVKQGAVD LTMDDDASVE EQEVVEQGVV DLTMDDDASV EEQEVVEEGV VDLTMDDDAS 420 VEEQEVVEEG VVDLTMDDDD SVKHHKQQGI IDGTDDIAVE KQEKVLEQCS RATTDQYTVR 480 EKEMVVEQGV IDPKYMDLAT EDQVKLSIID DHGTVPMDNI VVKDQDKAVV QYASDAIVTI 540 KDESPVEEHD TVGNQGVIDK NGRTKDDIDV EGHGYVNEQV IVDNWGTSSD ATALEGQKNE 600 AEPRIGDEQI AGKDMDGVHA EGNMLEQRTS DKQGATQSDF TVDKHKDVAE CVRHEWGAPE 660 DDLAMDRTAY QGTRDWGIVN KEKVKLPADD RAMDTAAYQG TGDWGIVNKD KVKLPEDDRA 720 MDTAAYQGTG DWGIVSKEKY TLPARRYPQK PRKLNCPSYM SKGTCTYGPS CHFNHPPLKS 780 RSDESWRPSE RRNHGAAEIL ELNRLGLPIR EGARNCDYYM RTGACRYGKN CHFNHPDHVI 840 DAQFSPPTGW EDNALQMEKS SDHTLDETSR MKKSSDGATF DDRSHMKKSS DDATLDDRSH 900 LKKPSDGAIV DDTSYSKKSS DHENSSSSGV LPPSIFRMLL PPQKVLPGTE GKAKKKSDWS 960 SDDSDGCCSA DSSDGPLCKQ GEHVDYPERP GRPEYHRPKQ SKYKEEVNYP ERPGKPDCPF 1020 YMRFGDCKFA SACNYHHPKD KYPAGRPDEP ECPFLMKRGY CKLRAQCKFY HPEASSPTDA 1080 KRSVTTDEHH PSTRTTLQDY MLPQQPQYPE RPGQPECRYY LQFGKCKYLS ACIFHHPKDR 1140 LAAHSDQIGP GMPDCPFYMK AGKCQFGSAC EFRHPKDIHS SSTAEEAFDK RSGSGAYDSL 1200 TRSDNGVEQQ EESIMYPERP GEPECNHYMR QGYCKFQMNC KYHHPGDRLS KKQY

Sequence ? help Back to Top

Protein Sequence Length: 1254 aa Download sequence

PASASASASL LRHHQDHDQE QDQAAPAHAP RAKRALHLLP QTPTTSPSLA PSAAAAAHAH  60
GLGFSTQDQD GYDAVAVEGQ EVLEQGGVVA AGIIGQGTQD ATAVAVAVAL DDDDQEKKPL  120
GQCTSTTSSY CEELRTTTME TDVAKDDQEA VEQGVIVEQE GAPMDDAIAV DDDDQEEKPL  180
EQSSTTYGDL GTAMENDAAA AAVQVQEQVV EQQDATQPRD EDTAAEGQET PGAHQPGSTE  240
NADDAVQVQE EGETADATAV HDHDKAVEQC TTADDLGTTM ENDVAKDDQE VLEQGVIDQG  300
DASTIDAVKD HEVLLLGAVE GTRATTDGIA AVEDQGKNVE QCTTYSDLGT TMKNDDAVDD  360
KQVVKQGAVD LTMDDDASVE EQEVVEQGVV DLTMDDDASV EEQEVVEEGV VDLTMDDDAS  420
VEEQEVVEEG VVDLTMDDDD SVKHHKQQGI IDGTDDIAVE KQEKVLEQCS RATTDQYTVR  480
EKEMVVEQGV IDPKYMDLAT EDQVKLSIID DHGTVPMDNI VVKDQDKAVV QYASDAIVTI  540
KDESPVEEHD TVGNQGVIDK NGRTKDDIDV EGHGYVNEQV IVDNWGTSSD ATALEGQKNE  600
AEPRIGDEQI AGKDMDGVHA EGNMLEQRTS DKQGATQSDF TVDKHKDVAE CVRHEWGAPE  660
DDLAMDRTAY QGTRDWGIVN KEKVKLPADD RAMDTAAYQG TGDWGIVNKD KVKLPEDDRA  720
MDTAAYQGTG DWGIVSKEKY TLPARRYPQK PRKLNCPSYM SKGTCTYGPS CHFNHPPLKS  780
RSDESWRPSE RRNHGAAEIL ELNRLGLPIR EGARNCDYYM RTGACRYGKN CHFNHPDHVI  840
DAQFSPPTGW EDNALQMEKS SDHTLDETSR MKKSSDGATF DDRSHMKKSS DDATLDDRSH  900
LKKPSDGAIV DDTSYSKKSS DHENSSSSGV LPPSIFRMLL PPQKVLPGTE GKAKKKSDWS  960
SDDSDGCCSA DSSDGPLCKQ GEHVDYPERP GRPEYHRPKQ SKYKEEVNYP ERPGKPDCPF  1020
YMRFGDCKFA SACNYHHPKD KYPAGRPDEP ECPFLMKRGY CKLRAQCKFY HPEASSPTDA  1080
KRSVTTDEHH PSTRTTLQDY MLPQQPQYPE RPGQPECRYY LQFGKCKYLS ACIFHHPKDR  1140
LAAHSDQIGP GMPDCPFYMK AGKCQFGSAC EFRHPKDIHS SSTAEEAFDK RSGSGAYDSL  1200
TRSDNGVEQQ EESIMYPERP GEPECNHYMR QGYCKFQMNC KYHHPGDRLS KKQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-42	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG074670.3