PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG074670.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 827aa MW: 89725.4 Da PI: 3.9618

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG074670.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.5e-09	756	778	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.2 756 NCPSYMSKGTCTYGPSCHFNHPP 778 7********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 827 aa Download sequence
TPASASASAS LLRHHQDHDQ EQDQAAPAHA PRAKRALHLL PQTPTTSPSL APSAAAAAHA 60 HGLGFSTQDQ DGYDAVAVEG QEVLEQGGVV AAGIIGQGTQ DATAVAVAVA LDDDDQEKKP 120 LGQCTSTTSS YCEELRTTTM ETDVAKDDQE AVEQGVIVEQ EGAPMDDAIA VDDDDQEEKP 180 LEQSSTTYGD LGTAMENDAA AAAVQVQEQV VEQQDATQPR DEDTAAEGQE TPGAHQPGST 240 ENADDAVQVQ EEGETADATA VHDHDKAVEQ CTTADDLGTT MENDVAKDDQ EVLEQGVIDQ 300 GDASTIDAVK DHEVLLLGAV EGTRATTDGI AAVEDQGKNV EQCTTYSDLG TTMKNDDAVD 360 DKQVVKQGAV DLTMDDDASV EEQEVVEQGV VDLTMDDDAS VEEQEVVEEG VVDLTMDDDA 420 SVEEQEVVEE GVVDLTMDDD DSVKHHKQQG IIDGTDDIAV EKQEKVLEQC SRATTDQYTV 480 REKEMVVEQG VIDPKYMDLA TEDQVKLSII DDHGTVPMDN IVVKDQDKAV VQYASDAIVT 540 IKDESPVEEH DTVGNQGVID KNGRTKDDID VEGHGYVNEQ VIVDNWGTSS DATALEGQKN 600 EAEPRIGDEQ IAGKDMDGVH AEGNMLEQRT SDKQGATQSD FTVDKHKDVA ECVRHEWGAP 660 EDDLAMDRTA YQGTRDWGIV NKEKVKLPAD DRAMDTAAYQ GTGDWGIVNK DKVKLPEDDR 720 AMDTAAYQGT GDWGIVSKEK YTLPARRYPQ KPRKLNCPSY MSKGTCTYGP SCHFNHPPQL 780 KSRSDESWRP SERRNHGAAE ILELNRLGLP IREVCLCYLF ICWSWYL

Sequence ? help Back to Top

Protein Sequence Length: 827 aa Download sequence

TPASASASAS LLRHHQDHDQ EQDQAAPAHA PRAKRALHLL PQTPTTSPSL APSAAAAAHA  60
HGLGFSTQDQ DGYDAVAVEG QEVLEQGGVV AAGIIGQGTQ DATAVAVAVA LDDDDQEKKP  120
LGQCTSTTSS YCEELRTTTM ETDVAKDDQE AVEQGVIVEQ EGAPMDDAIA VDDDDQEEKP  180
LEQSSTTYGD LGTAMENDAA AAAVQVQEQV VEQQDATQPR DEDTAAEGQE TPGAHQPGST  240
ENADDAVQVQ EEGETADATA VHDHDKAVEQ CTTADDLGTT MENDVAKDDQ EVLEQGVIDQ  300
GDASTIDAVK DHEVLLLGAV EGTRATTDGI AAVEDQGKNV EQCTTYSDLG TTMKNDDAVD  360
DKQVVKQGAV DLTMDDDASV EEQEVVEQGV VDLTMDDDAS VEEQEVVEEG VVDLTMDDDA  420
SVEEQEVVEE GVVDLTMDDD DSVKHHKQQG IIDGTDDIAV EKQEKVLEQC SRATTDQYTV  480
REKEMVVEQG VIDPKYMDLA TEDQVKLSII DDHGTVPMDN IVVKDQDKAV VQYASDAIVT  540
IKDESPVEEH DTVGNQGVID KNGRTKDDID VEGHGYVNEQ VIVDNWGTSS DATALEGQKN  600
EAEPRIGDEQ IAGKDMDGVH AEGNMLEQRT SDKQGATQSD FTVDKHKDVA ECVRHEWGAP  660
EDDLAMDRTA YQGTRDWGIV NKEKVKLPAD DRAMDTAAYQ GTGDWGIVNK DKVKLPEDDR  720
AMDTAAYQGT GDWGIVSKEK YTLPARRYPQ KPRKLNCPSY MSKGTCTYGP SCHFNHPPQL  780
KSRSDESWRP SERRNHGAAE ILELNRLGLP IREVCLCYLF ICWSWYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	2e-06	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG074670.2