PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG074670.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 990aa MW: 110633 Da PI: 4.684 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27 | 7.9e-09 | 469 | 491 | 5 | 27 |
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.10 469 NCPSYMSKGTCTYGPSCHFNHPP 491 7********************96 PP | |||||||
2 | zf-CCCH | 35.6 | 1.6e-11 | 529 | 551 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ TRIDC1BG074670.10 529 RNCDYYMRTGACRYGKNCHFNHP 551 79********************9 PP | |||||||
3 | zf-CCCH | 28 | 3.8e-09 | 729 | 754 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++r+G Ck+ + C+++H++ TRIDC1BG074670.10 729 GKPDCPFYMRFGDCKFASACNYHHPK 754 7899********************96 PP | |||||||
4 | zf-CCCH | 27.6 | 5.1e-09 | 763 | 788 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck ++CkF H++ TRIDC1BG074670.10 763 DEPECPFLMKRGYCKLRAQCKFYHPE 788 689*********************96 PP | |||||||
5 | zf-CCCH | 19.9 | 1.3e-06 | 827 | 853 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ TRIDC1BG074670.10 827 PGQPECRYYLQFGKCKYLSACIFHHPK 853 5789*********************96 PP | |||||||
6 | zf-CCCH | 29.7 | 1.1e-09 | 865 | 891 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++ G C++G+ C F H++ TRIDC1BG074670.10 865 PGMPDCPFYMKAGKCQFGSACEFRHPK 891 5789*********************96 PP | |||||||
7 | zf-CCCH | 19.3 | 2e-06 | 935 | 960 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G+Ck+ +Ck++H+ TRIDC1BG074670.10 935 PGEPECNHYMRQGYCKFQMNCKYHHP 960 5799*********************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 990 aa Download sequence |
LDDDDQEKKP LGQCTSTTSS YCEELRTTTM ETDVAKDDQE QVVEQQDATQ PRDEDTAAEG 60 QETPGAHQPG STENADDAVQ VQEEGETADA TAVHDHDKAV EQCTTADDLG TTMENDVAKD 120 DQEVLEQGVI DQGDASTIDA VKDHEVLLLG AVEGTRATTD GIAAVEDQGK NVEQCTTYSD 180 LGTTMKNDDA VDDKQVVEEG VVDLTMDDDD SVKHHKQQGI IDGTDDIAVE KQEKVLEQCS 240 RATTDQYTVR EKEMVVEQGV IDPKYMDLAT EDQVKLSIID DHGTVPMDNI VVKDQDKAVV 300 QYASDAIVTI KDESPVEEHD TVGNQGVIDK NGRTKDDIDV EGHGYVNEQV IVDNWGTSSD 360 ATALEGQKNE AEPRIGDEQI AGKDMDGVHA EGNMLEQRTS DKQGATQSDF TVDKHKDVAE 420 CVRHEWGAPE DDLAMDRTAY QGTGDWGIVS KEKYTLPARR YPQKPRKLNC PSYMSKGTCT 480 YGPSCHFNHP PQLKSRSDES WRPSERRNHG AAEILELNRL GLPIREGARN CDYYMRTGAC 540 RYGKNCHFNH PDHVIDAQFS PPTGWEDNAL QMEKSSDHTL DETSRMKKSS DGATFDDRSH 600 MKKSSDDATL DDRSHLKKPS DGAIVDDTSY SKKSSDHENS SSSGVLPPSI FRMLLPPQKV 660 LPGTEGKAKK KSDWSSDDSD GCCSADSSDG PLCKQGEHVD YPERPGRPEY HRPKQSKYKE 720 EVNYPERPGK PDCPFYMRFG DCKFASACNY HHPKDKYPAG RPDEPECPFL MKRGYCKLRA 780 QCKFYHPEAS SPTDAKRSVT TDEHHPSTRT TLQDYMLPQQ PQYPERPGQP ECRYYLQFGK 840 CKYLSACIFH HPKDRLAAHS DQIGPGMPDC PFYMKAGKCQ FGSACEFRHP KDIHSSSTAE 900 EAFDKRSGSG AYDSLTRSDN GVEQQEESIM YPERPGEPEC NHYMRQGYCK FQMNCKYHHP 960 GDREVIRSDH LSKAGTRWLP HECYQQKALS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12680.1 | 2e-41 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG074670.10 |