PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG074670.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 1284aa MW: 141535 Da PI: 4.4123

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG074670.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.6	1.1e-08	767	789	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C+ ++ GtC yG++C+F+H+p TRIDC1BG074670.1 767 NCPSYMSKGTCTYGPSCHFNHPP 789 7********************96 PP
2	zf-CCCH	35.2	2.2e-11	827	849	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 ++C++++rtG C+yG +C+F+H+ TRIDC1BG074670.1 827 RNCDYYMRTGACRYGKNCHFNHP 849 79********************9 PP
3	zf-CCCH	27.6	5.1e-09	1027	1052	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f++r+G Ck+ + C+++H++ TRIDC1BG074670.1 1027 GKPDCPFYMRFGDCKFASACNYHHPK 1052 7899********************96 PP
4	zf-CCCH	27.2	6.8e-09	1061	1086	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f ++ G+Ck ++CkF H++ TRIDC1BG074670.1 1061 DEPECPFLMKRGYCKLRAQCKFYHPE 1086 689*********************96 PP
5	zf-CCCH	19.5	1.7e-06	1125	1151	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++Cr+++++G Cky + C F+H++ TRIDC1BG074670.1 1125 PGQPECRYYLQFGKCKYLSACIFHHPK 1151 5789*********************96 PP
6	zf-CCCH	29.3	1.5e-09	1163	1189	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+f+++ G C++G+ C F H++ TRIDC1BG074670.1 1163 PGMPDCPFYMKAGKCQFGSACEFRHPK 1189 5789*********************96 PP
7	zf-CCCH	18.9	2.6e-06	1233	1258	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++r G+Ck+ +Ck++H+ TRIDC1BG074670.1 1233 PGEPECNHYMRQGYCKFQMNCKYHHP 1258 5799*********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1284 aa Download sequence
HLHHQEPPPP STPASASASA SLLRHHQDHD QEQDQAAPAH APRAKRALHL LPQTPTTSPS 60 LAPSAAAAAH AHGLGFSTQD QDGYDAVAVE GQEVLEQGGV VAAGIIGQGT QDATAVAVAV 120 ALDDDDQEKK PLGQCTSTTS SYCEELRTTT METDVAKDDQ EAVEQGVIVE QEGAPMDDAI 180 AVDDDDQEEK PLEQSSTTYG DLGTAMENDA AAAAVQVQEQ VVEQQDATQP RDEDTAAEGQ 240 ETPGAHQPGS TENADDAVQV QEEGETADAT AVHDHDKAVE QCTTADDLGT TMENDVAKDD 300 QEVLEQGVID QGDASTIDAV KDHEVLLLGA VEGTRATTDG IAAVEDQGKN VEQCTTYSDL 360 GTTMKNDDAV DDKQVVKQGA VDLTMDDDAS VEEQEVVEQG VVDLTMDDDA SVEEQEVVEE 420 GVVDLTMDDD ASVEEQEVVE EGVVDLTMDD DDSVKHHKQQ GIIDGTDDIA VEKQEKVLEQ 480 CSRATTDQYT VREKEMVVEQ GVIDPKYMDL ATEDQVKLSI IDDHGTVPMD NIVVKDQDKA 540 VVQYASDAIV TIKDESPVEE HDTVGNQGVI DKNGRTKDDI DVEGHGYVNE QVIVDNWGTS 600 SDATALEGQK NEAEPRIGDE QIAGKDMDGV HAEGNMLEQR TSDKQGATQS DFTVDKHKDV 660 AECVRHEWGA PEDDLAMDRT AYQGTRDWGI VNKEKVKLPA DDRAMDTAAY QGTGDWGIVN 720 KDKVKLPEDD RAMDTAAYQG TGDWGIVSKE KYTLPARRYP QKPRKLNCPS YMSKGTCTYG 780 PSCHFNHPPQ LKSRSDESWR PSERRNHGAA EILELNRLGL PIREGARNCD YYMRTGACRY 840 GKNCHFNHPD HVIDAQFSPP TGWEDNALQM EKSSDHTLDE TSRMKKSSDG ATFDDRSHMK 900 KSSDDATLDD RSHLKKPSDG AIVDDTSYSK KSSDHENSSS SGVLPPSIFR MLLPPQKVLP 960 GTEGKAKKKS DWSSDDSDGC CSADSSDGPL CKQGEHVDYP ERPGRPEYHR PKQSKYKEEV 1020 NYPERPGKPD CPFYMRFGDC KFASACNYHH PKDKYPAGRP DEPECPFLMK RGYCKLRAQC 1080 KFYHPEASSP TDAKRSVTTD EHHPSTRTTL QDYMLPQQPQ YPERPGQPEC RYYLQFGKCK 1140 YLSACIFHHP KDRLAAHSDQ IGPGMPDCPF YMKAGKCQFG SACEFRHPKD IHSSSTAEEA 1200 FDKRSGSGAY DSLTRSDNGV EQQEESIMYP ERPGEPECNH YMRQGYCKFQ MNCKYHHPGD 1260 RLSKKQYVCK TRINFEKKLE SAAF

Sequence ? help Back to Top

Protein Sequence Length: 1284 aa Download sequence

HLHHQEPPPP STPASASASA SLLRHHQDHD QEQDQAAPAH APRAKRALHL LPQTPTTSPS  60
LAPSAAAAAH AHGLGFSTQD QDGYDAVAVE GQEVLEQGGV VAAGIIGQGT QDATAVAVAV  120
ALDDDDQEKK PLGQCTSTTS SYCEELRTTT METDVAKDDQ EAVEQGVIVE QEGAPMDDAI  180
AVDDDDQEEK PLEQSSTTYG DLGTAMENDA AAAAVQVQEQ VVEQQDATQP RDEDTAAEGQ  240
ETPGAHQPGS TENADDAVQV QEEGETADAT AVHDHDKAVE QCTTADDLGT TMENDVAKDD  300
QEVLEQGVID QGDASTIDAV KDHEVLLLGA VEGTRATTDG IAAVEDQGKN VEQCTTYSDL  360
GTTMKNDDAV DDKQVVKQGA VDLTMDDDAS VEEQEVVEQG VVDLTMDDDA SVEEQEVVEE  420
GVVDLTMDDD ASVEEQEVVE EGVVDLTMDD DDSVKHHKQQ GIIDGTDDIA VEKQEKVLEQ  480
CSRATTDQYT VREKEMVVEQ GVIDPKYMDL ATEDQVKLSI IDDHGTVPMD NIVVKDQDKA  540
VVQYASDAIV TIKDESPVEE HDTVGNQGVI DKNGRTKDDI DVEGHGYVNE QVIVDNWGTS  600
SDATALEGQK NEAEPRIGDE QIAGKDMDGV HAEGNMLEQR TSDKQGATQS DFTVDKHKDV  660
AECVRHEWGA PEDDLAMDRT AYQGTRDWGI VNKEKVKLPA DDRAMDTAAY QGTGDWGIVN  720
KDKVKLPEDD RAMDTAAYQG TGDWGIVSKE KYTLPARRYP QKPRKLNCPS YMSKGTCTYG  780
PSCHFNHPPQ LKSRSDESWR PSERRNHGAA EILELNRLGL PIREGARNCD YYMRTGACRY  840
GKNCHFNHPD HVIDAQFSPP TGWEDNALQM EKSSDHTLDE TSRMKKSSDG ATFDDRSHMK  900
KSSDDATLDD RSHLKKPSDG AIVDDTSYSK KSSDHENSSS SGVLPPSIFR MLLPPQKVLP  960
GTEGKAKKKS DWSSDDSDGC CSADSSDGPL CKQGEHVDYP ERPGRPEYHR PKQSKYKEEV  1020
NYPERPGKPD CPFYMRFGDC KFASACNYHH PKDKYPAGRP DEPECPFLMK RGYCKLRAQC  1080
KFYHPEASSP TDAKRSVTTD EHHPSTRTTL QDYMLPQQPQ YPERPGQPEC RYYLQFGKCK  1140
YLSACIFHHP KDRLAAHSDQ IGPGMPDCPF YMKAGKCQFG SACEFRHPKD IHSSSTAEEA  1200
FDKRSGSGAY DSLTRSDNGV EQQEESIMYP ERPGEPECNH YMRQGYCKFQ MNCKYHHPGD  1260
RLSKKQYVCK TRINFEKKLE SAAF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12680.1	1e-42	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG074670.1