PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG062840.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 300aa MW: 32817.7 Da PI: 5.9905 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 55 | 1.4e-17 | 141 | 195 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le F+++++++ e++ LA++l+L rqV vWFqNrRa+ k TRIDC1BG062840.1 141 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSSLANRLSLRPRQVEVWFQNRRARTK 195 678899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 117.2 | 9.1e-38 | 141 | 229 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq+++LE sF+e+++L+ e+K++la++L l+prqv+vWFqnrRARtk+kq+E d+e+Lkr+++al++en++L++ev+eLr+ TRIDC1BG062840.1 141 RKKLRLSKEQSAFLEGSFKEHSTLTLEQKSSLANRLSLRPRQVEVWFQNRRARTKLKQTEADCEQLKRCCEALARENRKLQREVAELRA 229 69*************************************************************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence |
MELELSLGDL PAPVKANNTM LAPATCQGED NDDLALGLRV TATERDDQDN QRTGIETVEG 60 EDSDEACPEL PVRASPFRQA SAQTASANSW GFDVNAAVPV DGRASMARSL SPPSMHMEVP 120 VTQGVDEEAS EDEDNGGGRV RKKLRLSKEQ SAFLEGSFKE HSTLTLEQKS SLANRLSLRP 180 RQVEVWFQNR RARTKLKQTE ADCEQLKRCC EALARENRKL QREVAELRAS RAPYPLYNLN 240 HHMSGFSTAL PVCSSCSTIS AVSSPGSSPM STLFAGRPHF GPFTVTHPVL PLRRQPSATL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 145 | RVRKKLR |
2 | 190 | 198 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 9e-48 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG062840.1 |