PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG062640.2
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family RAV
Protein Properties Length: 394aa    MW: 42506 Da    PI: 10.3652
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG062640.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.43.5e-1368116155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+ykGV   + +grW A+I++      r +r++lg+f  + eAa+a++aa+++++g
  TRIDC1BG062640.2  68 SKYKGVVPQP-NGRWGAQIYE------RhQRVWLGTFTGEAEAARAYDAAAQRFRG 116
                       89****9888.8*********......44**********99*************98 PP
2B393.51.5e-29204304190
                       EEEE-..-HHHHTT-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                       f+k+ tpsdv+k++rlv+pk++ae+h            +g + +++ l + d  g++W+++++y+++s++yvltkGW++Fvk++gL +gD v 
  TRIDC1BG062640.2 204 FDKTVTPSDVGKLNRLVIPKQHAEKHfplqlpsagaavSG-ECKGMLLNFDDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVG 295
                       89***************************88888777532.34899*********************************************** PP

                       EEE-SSSEE CS
                B3  82 Fkldgrsef 90 
                       F+++ + + 
  TRIDC1BG062640.2 296 FYRSASGNN 304
                       **7654444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
RIRMDSARSC LVDDVSSGAS TGKKASPSPA AAATKPLQRV GSGASAVMDA PEPGAEADSG  60
RVGKLPSSKY KGVVPQPNGR WGAQIYERHQ RVWLGTFTGE AEAARAYDAA AQRFRGRDAV  120
TNFRPLAESD PEDAAELRFL AARSKAEVVD MLRKHTYPDE LAQYKRAYFV AAAASSPTSS  180
SLPPASSPSS ASAPSPAARR EHLFDKTVTP SDVGKLNRLV IPKQHAEKHF PLQLPSAGAA  240
VSGECKGMLL NFDDAAGKVW RFRYSYWNSS QSYVLTKGWS RFVKEKGLHA GDAVGFYRSA  300
SGNNQLFIEC KLRSKTKTTT TTTLTKATAA TPSPAPVVRT VRLFGVDLLT APAPRHAPEH  360
ENYGMTKRSR DADVAAPTPV HAVWKKRCMD FALT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.26e-98RAV family protein