PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG060280.4
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 294aa    MW: 32205.6 Da    PI: 10.5173
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG060280.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.84.2e-1653112155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       s+++GV++++++gr++A+++d  s+n    k+ k+++lg ++ +e Aa+a++ a++k++g
  TRIDC1BG060280.4  53 SRFRGVSRHRWTGRYEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 112
                       789******************888855666447*************************98 PP
2AP2569.9e-18155206155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s+y+GV +++++grW+A+I   +   g +k+ +lg++gt eeAa+a++ a+ +++g
  TRIDC1BG060280.4 155 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYKG 206
                       89****************99966...3.6***********************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
KSEIESYAGQ PAVVGGGGGE VVVRRRRREP TLGPVGGGIG KASLPGVAVK RSSRFRGVSR  60
HRWTGRYEAH LWDKNSWNPT QRKKGKQVYL GAYDEEEAAA RAYDLAALKY WGATTYTNFP  120
VMDYDKELKI METLTKEEYL ASLRRKSSGF SRGVSKYRGV ARHHQNGRWE ARIGRVFGNK  180
YLYLGTYGTQ EEAARAYDIA AIEYKGVNAV TNFDLRSYIT WLKPPVAGPA VLADHLLAGV  240
MLPPTTAGAS PGSPFILDHS AAALGGGLRR RSSSSSSSTA LSLLLKSTMF KQLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987PTQRKKGKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.32e-78AP2 family protein