PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG060280.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

AP2

Protein Properties

Length: 280aa MW: 31088 Da PI: 9.9423

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG060280.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.9e-16	25	84	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g TRIDC1BG060280.2 25 SRFRGVSRHRWTGRYEAHLWDkNSWNPtqrKKgKQVYLGAYDEEEAAARAYDLAALKYWG 84 789****************888855666447***********************98 PP
2	AP2	56.1	9.1e-18	127	178	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++gt eeAa+a++ a+ +++g TRIDC1BG060280.2 127 SKYRGVARHHQNGRWEARIGRvF---G-NKYLYLGTYGTQEEAARAYDIAAIEYKG 178 89**************99966...3.6*********************9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
EPTLGPVGGG IGKASLPGVA VKRSSRFRGV SRHRWTGRYE AHLWDKNSWN PTQRKKGKQV 60 YLGAYDEEEA AARAYDLAAL KYWGATTYTN FPVMDYDKEL KIMETLTKEE YLASLRRKSS 120 GFSRGVSKYR GVARHHQNGR WEARIGRVFG NKYLYLGTYG TQEEAARAYD IAAIEYKGVN 180 AVTNFDLRSY ITWLKPPVAG PAVLADHLLA GMHTQLPPSP DGGGVPGQPF HPRPQRGGAR 240 WRPEEEELLV VLLHGAQPAA QVDHVQAARG EERPGFTADG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	51	59	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G16060.1	6e-80	AP2 family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG060280.2