PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG056900.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-PHD

Protein Properties

Length: 1278aa MW: 141805 Da PI: 4.6817

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG056900.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.7	5.5e-10	630	670	12	52
HHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 12 leeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 e+L+++F ++yps++ +e LA++lgLt qV WF R TRIDC1BG056900.7 630 NERLNQYFTTDQYPSRAVKESLAQELGLTFHQVNKWFESTR 670 589**********************************8766 PP
2	Homeobox	34.4	3.6e-11	1107	1147	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++L e F+ ++yps++ +e LA++lgLt rqV WF rR TRIDC1BG056900.7 1107 QRLHEQFKTDQYPSRAVKESLAQELGLTFRQVEKWFESRRR 1147 6899***********************************96 PP
3	PHD	39.2	1.6e-13	282	337	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ ++ +++++lCdg C++ fH++Cl+++l ++++peg wlC+ C++k TRIDC1BG056900.7 282 VCATCSLqeATLNNDIILCDGaCDRGFHQNCLNPPLLTKDIPEGeeGWLCPACDCK 337 599999854555******66*****************999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 1278 aa Download sequence
TDHRRLAGRR RTLARCWFIW CNYVQIHILL RLRSARRQFS EAVFFLLLEY KIISGRHQMD 60 KSNTSGCAED TIETRSYANS SLNPEALKHQ SFPFPYTSPS GERKNFKRAA NRGRKGSRVL 120 SSRTYPLKSS ESTVRVLRSR SVADKSPSDS VQTPTEKAAK KPPSDSVDTL VKPAAKRIKR 180 DRPTKGGPDD ELSKIRKRIR YILNRMNYHQ SFLEAYASEG WKNQSLEKIR PEKELERAKE 240 EIVRCKLRIR EAFQNLDHLL TVGKLEESLF DSEGKISSDD IVCATCSLQE ATLNNDIILC 300 DGACDRGFHQ NCLNPPLLTK DIPEGEEGWL CPACDCKIDC IELINELQGT DLDINDSWEK 360 VFPEAAAVAH GPMQNDVADL PSDDSEDDDF DPNISEEHVA GHAEGSSEED GDEGSDSDDS 420 NFMTSSDNSE HVKEKVKVDD LGLPSEDSED DDYDPAGPDS DKDIEEKQDE SDFTSDSDEF 480 CAEITKSCSK DEVSSGPKVG GRTNDLEGAP VRPNTSMSHS KDLEIDPDVI LPSTKRQVQR 540 LDYKKLYDDT YGEAPSESSD GDEWSGKSTL KEDNEERNEV DSFARKSSRG TRAVHPDGFH 600 GLVNDQHAGG LTSAGSNSKA NKRHFGPVIN ERLNQYFTTD QYPSRAVKES LAQELGLTFH 660 QVNKWFESTR HARAAAMKNG TQLEKQSNSR KKKSSDATHM EVKDQPNACK EEGIRQHSPV 720 KQDTDGGQRT HVPPESSQSY TKTSGLIGCP KSESRENHEK NTSSKYVGMP TDGSAEDQIL 780 ELEPEDEGSD SDDLNFVTRS GNSEPLKNRE KIDDLGLPSA YSEDDDYDSD EVIEMMQSSS 840 DESNFTTSSD NPEDVKEKVD DLGLPSEDSE DDDYDPAGPG SDEDIGKKQS SSEKSHSSDK 900 SENRKTKRKV DDLGLPSEDS EDDDYDPASP DSDKDIEEKQ DESDFSSDSD DFCVEIAKSC 960 CGQEGVPSGA KVGADRTDDL EGTTICANAA ISNLPSKDPE MDQYVVLPVS ARQKVQSPDS 1020 KKLAAYGRAP SDSSYSEELS KKGTPEKDKG KESEAGSFVR QSNEFTPQRS QQSFHGSVNG 1080 QNAEELLTPN GSSTTGQKRQ YGPIINQRLH EQFKTDQYPS RAVKESLAQE LGLTFRQVEK 1140 WFESRRRHIR VASNKGSTHV ENHSTKENPN ECKSDALNED TPSGILNEGI TQDGPLKQDI 1200 GGGLKTNAST PNSSQRYTTP LVRRPKGESR ENHMKNTSSS SSGRPEGSDA GYAVLALEAL 1260 DEKIRSKMLQ ELKKRKIG

Sequence ? help Back to Top

Protein Sequence Length: 1278 aa Download sequence

TDHRRLAGRR RTLARCWFIW CNYVQIHILL RLRSARRQFS EAVFFLLLEY KIISGRHQMD  60
KSNTSGCAED TIETRSYANS SLNPEALKHQ SFPFPYTSPS GERKNFKRAA NRGRKGSRVL  120
SSRTYPLKSS ESTVRVLRSR SVADKSPSDS VQTPTEKAAK KPPSDSVDTL VKPAAKRIKR  180
DRPTKGGPDD ELSKIRKRIR YILNRMNYHQ SFLEAYASEG WKNQSLEKIR PEKELERAKE  240
EIVRCKLRIR EAFQNLDHLL TVGKLEESLF DSEGKISSDD IVCATCSLQE ATLNNDIILC  300
DGACDRGFHQ NCLNPPLLTK DIPEGEEGWL CPACDCKIDC IELINELQGT DLDINDSWEK  360
VFPEAAAVAH GPMQNDVADL PSDDSEDDDF DPNISEEHVA GHAEGSSEED GDEGSDSDDS  420
NFMTSSDNSE HVKEKVKVDD LGLPSEDSED DDYDPAGPDS DKDIEEKQDE SDFTSDSDEF  480
CAEITKSCSK DEVSSGPKVG GRTNDLEGAP VRPNTSMSHS KDLEIDPDVI LPSTKRQVQR  540
LDYKKLYDDT YGEAPSESSD GDEWSGKSTL KEDNEERNEV DSFARKSSRG TRAVHPDGFH  600
GLVNDQHAGG LTSAGSNSKA NKRHFGPVIN ERLNQYFTTD QYPSRAVKES LAQELGLTFH  660
QVNKWFESTR HARAAAMKNG TQLEKQSNSR KKKSSDATHM EVKDQPNACK EEGIRQHSPV  720
KQDTDGGQRT HVPPESSQSY TKTSGLIGCP KSESRENHEK NTSSKYVGMP TDGSAEDQIL  780
ELEPEDEGSD SDDLNFVTRS GNSEPLKNRE KIDDLGLPSA YSEDDDYDSD EVIEMMQSSS  840
DESNFTTSSD NPEDVKEKVD DLGLPSEDSE DDDYDPAGPG SDEDIGKKQS SSEKSHSSDK  900
SENRKTKRKV DDLGLPSEDS EDDDYDPASP DSDKDIEEKQ DESDFSSDSD DFCVEIAKSC  960
CGQEGVPSGA KVGADRTDDL EGTTICANAA ISNLPSKDPE MDQYVVLPVS ARQKVQSPDS  1020
KKLAAYGRAP SDSSYSEELS KKGTPEKDKG KESEAGSFVR QSNEFTPQRS QQSFHGSVNG  1080
QNAEELLTPN GSSTTGQKRQ YGPIINQRLH EQFKTDQYPS RAVKESLAQE LGLTFRQVEK  1140
WFESRRRHIR VASNKGSTHV ENHSTKENPN ECKSDALNED TPSGILNEGI TQDGPLKQDI  1200
GGGLKTNAST PNSSQRYTTP LVRRPKGESR ENHMKNTSSS SSGRPEGSDA GYAVLALEAL  1260
DEKIRSKMLQ ELKKRKIG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	200	KIRKRIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	6e-75	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG056900.7