PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG056900.4

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 649aa MW: 71616.4 Da PI: 4.644

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG056900.4	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	30.9	4.7e-10	2	41	13	52
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 ++L+++F ++yps++ +e LA++lgLt qV WF R TRIDC1BG056900.4 2 RRLNQYFTTDQYPSRAVKESLAQELGLTFHQVNKWFESTR 41 68**********************************8766 PP
2	Homeobox	35.6	1.6e-11	478	518	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 ++L e F+ ++yps++ +e LA++lgLt rqV WF rR TRIDC1BG056900.4 478 QRLHEQFKTDQYPSRAVKESLAQELGLTFRQVEKWFESRRR 518 6899***********************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence
MRRLNQYFTT DQYPSRAVKE SLAQELGLTF HQVNKWFEST RHARAAAMKN GTQLEKQSNS 60 RKKKSSDATH MEVKDQPNAC KEEGIRQHSP VKQDTDGGQR THVPPESSQS YTKTSGLIGC 120 PKSESRENHE KNTSSKYVGM PTDGSAEDQI LELEPEDEGS DSDDLNFVTR SGNSEPLKNR 180 EKIDDLGLPS AYSEDDDYDS DEVIEMMQSS SDESNFTTSS DNPEDVKEKV DDLGLPSEDS 240 EDDDYDPAGP GSDEDIGKKQ SSSEKSHSSD KSENRKTKRK VDDLGLPSED SEDDDYDPAS 300 PDSDKDIEEK QDESDFSSDS DDFCVEIAKS CCGQEGVPSG AKVGADRTDD LEGTTICANA 360 AISNLPSKDP EMDQYVVLPV SARQKVQSPD SKKLAAYGRA PSDSSYSEEL SKKGTPEKDK 420 GKESEAGSFV RQSNEFTPQR SQQSFHGSVN GQNAEELLTP NGSSTTGQKR QYGPIINQRL 480 HEQFKTDQYP SRAVKESLAQ ELGLTFRQVE KWFESRRRHI RVASNKGSTH VENHSTKENP 540 NECKSDALNE DTPSGILNEG ITQDGPLKQD IGGGLKTNAS TPNSSQRYTT PLVRRPKGES 600 RENHMKNTSS SSSGRPEGSD AGYAVLALEA LDEKIRSKML QELKKRKIG

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence

MRRLNQYFTT DQYPSRAVKE SLAQELGLTF HQVNKWFEST RHARAAAMKN GTQLEKQSNS  60
RKKKSSDATH MEVKDQPNAC KEEGIRQHSP VKQDTDGGQR THVPPESSQS YTKTSGLIGC  120
PKSESRENHE KNTSSKYVGM PTDGSAEDQI LELEPEDEGS DSDDLNFVTR SGNSEPLKNR  180
EKIDDLGLPS AYSEDDDYDS DEVIEMMQSS SDESNFTTSS DNPEDVKEKV DDLGLPSEDS  240
EDDDYDPAGP GSDEDIGKKQ SSSEKSHSSD KSENRKTKRK VDDLGLPSED SEDDDYDPAS  300
PDSDKDIEEK QDESDFSSDS DDFCVEIAKS CCGQEGVPSG AKVGADRTDD LEGTTICANA  360
AISNLPSKDP EMDQYVVLPV SARQKVQSPD SKKLAAYGRA PSDSSYSEEL SKKGTPEKDK  420
GKESEAGSFV RQSNEFTPQR SQQSFHGSVN GQNAEELLTP NGSSTTGQKR QYGPIINQRL  480
HEQFKTDQYP SRAVKESLAQ ELGLTFRQVE KWFESRRRHI RVASNKGSTH VENHSTKENP  540
NECKSDALNE DTPSGILNEG ITQDGPLKQD IGGGLKTNAS TPNSSQRYTT PLVRRPKGES  600
RENHMKNTSS SSSGRPEGSD AGYAVLALEA LDEKIRSKML QELKKRKIG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	5e-09	HB-PHD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG056900.4