PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG048240.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

MYB_related

Protein Properties

Length: 449aa MW: 49489.4 Da PI: 6.3046

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG048240.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.1	2.3e-19	16	58	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE++ lvda++++G++ W+ Ia+ ++ gRt++++k++w+ TRIDC1BG048240.9 16 KEAWTLEEEQVLVDAHRMHGNK-WAEIAKLLP-GRTDNSIKNHWN 58 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 449 aa Download sequence
MPRERWHNHL DPQIRKEAWT LEEEQVLVDA HRMHGNKWAE IAKLLPGRTD NSIKNHWNSS 60 VRKRLDEYDT GAALPVPVHV SHNDLKQVTM APPAENYIDL NKEPNISLSS VIVDHSDPTH 120 SPRVCSLKNI KGCSDFLSLS LPTAQPVTSC QASVADDSAV ALAIMGMKMN SGRDKDMELN 180 FVCQKGLQIN LPNEKGLEIN SVTAKPDGEI DNTGRESTLV KEAQSFGSLC YQIPKLEDID 240 LVRSPVLSRH HGSEHGVDGF QSPTGYATPS PTDGIQSDQL SVESILKSAA ENFPGTPSIL 300 RRRKRDKPTP SQDTDFKIDA NSDGFDTPKA NCTTYSPHSF KTASFLSLGR LDDQQLPSVL 360 GKFDVSPTYR LRSKRMAVLK TVEKHLDFSA DVMDTCDMVG SLKSSCRNTE SVNASSDISS 420 AQDRRINGHM IGLETLTSDF AHTTQLDAT

Sequence ? help Back to Top

Protein Sequence Length: 449 aa Download sequence

MPRERWHNHL DPQIRKEAWT LEEEQVLVDA HRMHGNKWAE IAKLLPGRTD NSIKNHWNSS  60
VRKRLDEYDT GAALPVPVHV SHNDLKQVTM APPAENYIDL NKEPNISLSS VIVDHSDPTH  120
SPRVCSLKNI KGCSDFLSLS LPTAQPVTSC QASVADDSAV ALAIMGMKMN SGRDKDMELN  180
FVCQKGLQIN LPNEKGLEIN SVTAKPDGEI DNTGRESTLV KEAQSFGSLC YQIPKLEDID  240
LVRSPVLSRH HGSEHGVDGF QSPTGYATPS PTDGIQSDQL SVESILKSAA ENFPGTPSIL  300
RRRKRDKPTP SQDTDFKIDA NSDGFDTPKA NCTTYSPHSF KTASFLSLGR LDDQQLPSVL  360
GKFDVSPTYR LRSKRMAVLK TVEKHLDFSA DVMDTCDMVG SLKSSCRNTE SVNASSDISS  420
AQDRRINGHM IGLETLTSDF AHTTQLDAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	307	RRRKRDK
2	301	308	RRRKRDKP
3	302	308	RRRKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	3e-32	MYB family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG048240.9