PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG044070.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | LBD | ||||||||
Protein Properties | Length: 166aa MW: 18264 Da PI: 9.2953 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 141.2 | 3.2e-44 | 59 | 157 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++ TRIDC1BG044070.2 59 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELNPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQD 151 7******************************************************************************************** PP DUF260 94 lallke 99 l +++ TRIDC1BG044070.2 152 LTRARY 157 998875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 166 aa Download sequence |
VFSFLLGIWI SFARKLDRPI HRSMASSSAS SFPGSVITMA SSAAAVGAAS SGAAGTGSPC 60 AACKFLRRKC QPDCVFAPYF PPDNPQKFVH VHRVFGASNV TKLLNELNPY QREDAVNSLA 120 YEADMRLRDP VYGCVGVISV LQHQLRQLQQ DLTRARYELS KYQFCI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 1e-51 | LBD family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG044070.2 |