PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG044070.1

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

LBD

Protein Properties

Length: 263aa MW: 27090.4 Da PI: 7.7804

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG044070.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.6	1e-43	36	134	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++ TRIDC1BG044070.1 36 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELNPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQD 128 7******************************************************************************************** PP DUF260 94 lallke 99 l +++ TRIDC1BG044070.1 129 LTRARY 134 998875 PP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence
MASSSASSFP GSVITMASSA AAVGAASSGA AGTGSPCAAC KFLRRKCQPD CVFAPYFPPD 60 NPQKFVHVHR VFGASNVTKL LNELNPYQRE DAVNSLAYEA DMRLRDPVYG CVGVISVLQH 120 QLRQLQQDLT RARYELSKYQ AAAAVAVSAS VGCNGTPAMA DFIGNTVPNC TQNFINISHS 180 TAIGAGLGFG HDQFAAVQML ARSYEGEGAV ARLGVNGGSG GGYDFGYTSA MGVGPVSGLG 240 PLSGGQFLKP GTAGGDERHT AAQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.3	4e-51	LBD family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG044070.1