PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG043410.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

SBP

Protein Properties

Length: 860aa MW: 94219 Da PI: 5.8433

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG043410.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	111.8	4e-35	176	251	1	76
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 +Cqv+gCead+ e+k yh+rh+vC +++a++v+++g ++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k TRIDC1BG043410.3 176 RCQVPGCEADIRELKGYHKRHRVCLRCAHASAVMIDGAQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 251 6************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 860 aa Download sequence
EVFQEMDASD SGGGGAAADA GEPVWDWDNL LDFTIPEDDS LLLPWDDPLG IEGDPTTEGA 60 LLPAPPPPQP VEAEPAPPPP PPSPPVEAGG SRRGVRKRDP RLVCPNYLAG IVPCACPELD 120 EMAAAAEVEE VAAEVLAGPR KKPRAGSRGS SGAVVKIGGG GGGSGVAGRG GAAEMRCQVP 180 GCEADIRELK GYHKRHRVCL RCAHASAVMI DGAQKRYCQQ CGKFHILLDF DEDKRSCRRK 240 LERHNKRRRR KPDSKGTLEK EIDEQLDLSA DGSGSGEIRE ENIDGASCDM LETVLSNKVL 300 DRETPVGSED ALSSPTCTQL SLQNDRSKSI VTFAASAEAC LGAKQENAKL TTSPVHDSRS 360 AYSSSCPTGR ISFKLYDWNP AEFPRRLRNQ IFEWLSSMPV ELEGYIRPGC TILTVFIAMP 420 QHMWDKLSED TANLVRNLVN APSSLLLGKG AFFVHVNNTI FQVLKDGATL MSTRLEVQAP 480 RIHCVHPTWF EAGKPIELLL CGSSLDQPKF RSLLSFDGEY LKHDCCRLTS RETFGCVKNG 540 APTFDSHHEV FRINITQTKP DTHGPGFVEV ENVFGLSNFV PILFGSKQLC FELERIQDVL 600 CGSSKYKSTN GEFPGITSDR YEHWKLQQTA MSGFLIEIGW LIKKPSPDEF KNLLSKTNIK 660 RWICLLEFLI QNNFINVLEM IVKSSDNIIG SEILSNLESG RLEDHVTAFL GYVRHARTIV 720 DQRAKHNEET QLQTRWCGDS VSDQPSLGTS VPLGKENVAA SDDFCLPSTN AECEAEESVP 780 LVTNEAVSHR QCRAPEMNAR WLNPALVAPF PSGMMRTRLV ATVAVAAILC FTACVALFHP 840 GRVGVLAAPV KRYLFSDCPP

Sequence ? help Back to Top

Protein Sequence Length: 860 aa Download sequence

EVFQEMDASD SGGGGAAADA GEPVWDWDNL LDFTIPEDDS LLLPWDDPLG IEGDPTTEGA  60
LLPAPPPPQP VEAEPAPPPP PPSPPVEAGG SRRGVRKRDP RLVCPNYLAG IVPCACPELD  120
EMAAAAEVEE VAAEVLAGPR KKPRAGSRGS SGAVVKIGGG GGGSGVAGRG GAAEMRCQVP  180
GCEADIRELK GYHKRHRVCL RCAHASAVMI DGAQKRYCQQ CGKFHILLDF DEDKRSCRRK  240
LERHNKRRRR KPDSKGTLEK EIDEQLDLSA DGSGSGEIRE ENIDGASCDM LETVLSNKVL  300
DRETPVGSED ALSSPTCTQL SLQNDRSKSI VTFAASAEAC LGAKQENAKL TTSPVHDSRS  360
AYSSSCPTGR ISFKLYDWNP AEFPRRLRNQ IFEWLSSMPV ELEGYIRPGC TILTVFIAMP  420
QHMWDKLSED TANLVRNLVN APSSLLLGKG AFFVHVNNTI FQVLKDGATL MSTRLEVQAP  480
RIHCVHPTWF EAGKPIELLL CGSSLDQPKF RSLLSFDGEY LKHDCCRLTS RETFGCVKNG  540
APTFDSHHEV FRINITQTKP DTHGPGFVEV ENVFGLSNFV PILFGSKQLC FELERIQDVL  600
CGSSKYKSTN GEFPGITSDR YEHWKLQQTA MSGFLIEIGW LIKKPSPDEF KNLLSKTNIK  660
RWICLLEFLI QNNFINVLEM IVKSSDNIIG SEILSNLESG RLEDHVTAFL GYVRHARTIV  720
DQRAKHNEET QLQTRWCGDS VSDQPSLGTS VPLGKENVAA SDDFCLPSTN AECEAEESVP  780
LVTNEAVSHR QCRAPEMNAR WLNPALVAPF PSGMMRTRLV ATVAVAAILC FTACVALFHP  840
GRVGVLAAPV KRYLFSDCPP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	234	252	KRSCRRKLERHNKRRRRKP
2	238	250	RRKLERHNKRRRR
3	245	252	NKRRRRKP
4	246	251	KRRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	1e-144	SBP family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG043410.3