PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG041600.1
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family AP2
Protein Properties Length: 394aa    MW: 42979.3 Da    PI: 8.4348
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG041600.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76e-1377133155
               AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       s y+GV++++++gr++A+++d  ++n+ ++k+   g ++ +e Aa+a++ a++k++g
  TRIDC1BG041600.1  77 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 133
                       57*******************6666777775555599******************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MASPNPAAAD ASGLQKKLEA AAGGSEGPPP AYGAAVGVAV AEQAPPRRLA PARKERVCTA  60
KDRISRMTPC AAGKRSSIYR GVTRHRWTGR YEAHLWDKST WNQNQNKKGK QGAYDDEEAA  120
ARAYDLAALK YWGAGTQINF PVSDYTRDVE EMQMISKEDY LVSLRRQLHN SRWDASLGQL  180
LGNDYMNLSC GKGIALDGKF AGSFGLERKI DLTNYIRWWV PKKTRQSDTS KAEEVADEIR  240
AIEGSVQLTE PYKLPSLGLG SHSNPSSAGL SACSILSQSG AFKSFLEKST KLSEECTFSK  300
EIDEGKVVVS VPTTGHHTSP VDINMNGLLV QRAPYTLAPV MPTPMKSTWS PADPSADHLF  360
WSNFILPSSQ PVTMATITTT TNEVSSSDPF KNQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.12e-86AP2 family protein