PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG038500.3

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HD-ZIP

Protein Properties

Length: 313aa MW: 33099.3 Da PI: 9.1808

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG038500.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.4e-19	153	207	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k TRIDC1BG038500.3 153 RKKLRLSKDQSAVLEDSFKEHSTLNPKQKAALARQLGLRPRQVEVWFQNRRARTK 207 788899***********************************************98 PP
2	HD-ZIP_I/II	130	9.7e-42	153	242	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE+sF+e+++L+p++K++lar+Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l TRIDC1BG038500.3 153 RKKLRLSKDQSAVLEDSFKEHSTLNPKQKAALARQLGLRPRQVEVWFQNRRARTKLKQTEVDCESLKRCCETLTEENRRLQREVQELR-AL 242 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 313 aa Download sequence
HLGLALGLGL GLSLGMSGTT SPVEPAAPQT AAAPSSKLGL GQQSWNGAGL FFPASSGEQR 60 SHADDRRLAA LACHEMPFLR GIDVNRAPTT GGARGSCGAS EDEEPGASSP DSTLSSLSGK 120 RGAPTRSAGG EQERTGAGSD DEDDSGAGGG GSRKKLRLSK DQSAVLEDSF KEHSTLNPKQ 180 KAALARQLGL RPRQVEVWFQ NRRARTKLKQ TEVDCESLKR CCETLTEENR RLQREVQELR 240 ALKLLAPPAP HLYMRAPPPT TLTMCPSCER VAPSGKPVVD ESRAAMVTRA VPTGPWGPVP 300 VLPVFLGRPA QRS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	152	158	SRKKLRL
2	202	210	RRARTKLKQ
3	216	221	ESLKRC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	5e-62	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG038500.3