PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG038500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 236aa MW: 25458.6 Da PI: 8.592 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.5 | 2.7e-19 | 90 | 144 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k TRIDC1BG038500.1 90 RKKLRLSKDQSAVLEDSFKEHSTLNPKQKAALARQLGLRPRQVEVWFQNRRARTK 144 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 130.8 | 5.4e-42 | 90 | 179 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE+sF+e+++L+p++K++lar+Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++ev+eLr +l TRIDC1BG038500.1 90 RKKLRLSKDQSAVLEDSFKEHSTLNPKQKAALARQLGLRPRQVEVWFQNRRARTKLKQTEVDCESLKRCCETLTEENRRLQREVQELR-AL 179 69*************************************************************************************9.55 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence |
DDRRLAALAC HEMPFLRGID VNRAPTTGGA RGSCGASEDE EPGASSPDST LSSLSGKRGA 60 PTRSAGGEQE RTGAGSDDED DSGAGGGGSR KKLRLSKDQS AVLEDSFKEH STLNPKQKAA 120 LARQLGLRPR QVEVWFQNRR ARTKLKQTEV DCESLKRCCE TLTEENRRLQ REVQELRALK 180 LLAPPAPHLY MRAPPPTTLT MCPSCERVAP SGKPVVDESR AAMVTRAVPT GPWGPC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 89 | 95 | SRKKLRL |
2 | 139 | 147 | RRARTKLKQ |
3 | 153 | 158 | ESLKRC |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16780.1 | 4e-63 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG038500.1 |