PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG034940.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 890aa MW: 96093.3 Da PI: 5.952 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 141 | 196 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k TRIDC1BG034940.5 141 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 196 688999***********************************************998 PP | |||||||
2 | START | 126.6 | 3e-40 | 363 | 607 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddkeqWdet 75 la +aa+ l+k+ +e++W + + ++ + ev+ +e ++ ++e r+s+vv+m++ +lv +ld++ +W e TRIDC1BG034940.5 363 LASTAADHLIKMCRTSEQLWARRRgAGPSSGEVMDAEEHARMlswpidsgkqqqadvahaARTEGTRDSAVVIMNSITLVDAFLDQN-KWMEL 454 78899999**************9998888888888887777788888888899999999999999**********************.***** PP -S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE.......-TTS--.-TTSEE-EE CS START 76 la....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd.......seqkppesssvvRael 147 ++ ka t++vi g g l lm+ae+q+lsplvp R++vf Ry+ +g+w ivd d ++q+++ +ss+vR+++ TRIDC1BG034940.5 455 FPsivcKARTIQVIHHGaasghlssGSLILMQAEMQFLSPLVPvREVVFFRYCVHnADEGTWSIVDFPADgfqeellQQQQQQ-TSSLVRCRR 546 *******************************************************9999******987653322221333433.9******** PP SSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 +pSg++i++ +ng+s+v+wveh+++ g + +++ v g+a+ga +wv+ lqrqce+ TRIDC1BG034940.5 547 RPSGCIIQDAPNGYSRVVWVEHMEVVGEEKplQPVFKDHVAGGAAFGATRWVSVLQRQCER 607 ************************98876549***************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 890 aa Download sequence |
RRTMFGDCQV LSSMAAMAAG GSSADALFAS PLMPNPGALA GFMSNSSAMP FHHHFSTNLI 60 PKEEGVMGGL HMAKDEELDL DMEMELSGGS GSGHLDGLLS FVDVDDDRDQ KPQHSEPDGA 120 GAEHHPSSSA AAAASNGNGK KKRYHRHTAH QIQQMEALFK ECPHPDDKQR LKLSQELGLK 180 PRQVKFWFQN RRTQMKAQQD RADNVILRAE NESLKTDNYR LQAAIRNVVC PSCGHAAVIG 240 DMSYEEQNLR IENARLKDEL DRLACIASRY GGGRQPGMSS ASALSCMSAP PPVLMPPLDL 300 DMNVYSRHFA DCAEQQHGAM DLMALPQQMA SGGHGIAATA SYLQGPMTPV VVQDQDKQLV 360 MELASTAADH LIKMCRTSEQ LWARRRGAGP SSGEVMDAEE HARMLSWPID SGKQQQADVA 420 HAARTEGTRD SAVVIMNSIT LVDAFLDQNK WMELFPSIVC KARTIQVIHH GAASGHLSSG 480 SLILMQAEMQ FLSPLVPVRE VVFFRYCVHN ADEGTWSIVD FPADGFQEEL LQQQQQQTSS 540 LVRCRRRPSG CIIQDAPNGY SRVVWVEHME VVGEEKPLQP VFKDHVAGGA AFGATRWVSV 600 LQRQCERLAS ELARSIADQG VIRTPEARTN MMKLSQRMIT AFCANISASG SQSWTALSDS 660 TEDTVRITTR KNTEPGQPSG VILTAVSTSW LPFSHQQVFE LLADEQQRCQ LEILSTGGSL 720 HEVAHIANGS HPRNCISLLR INSASNSSQN VELLLQESSI HPDGGSLVVF ATVDVDAIQV 780 TMSGEDPSYI PLLPMGFAIF PATSPSPGAT SSDTTSNGET SPGNADEPAA GCLLTVGMQV 840 LASAVPSAKL NLSSVTAINS HICNTIHQIT TALKGAGGGR TEPAPAGSDQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG034940.5 |