PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG034940.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 831aa MW: 90012.3 Da PI: 5.7756 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.8 | 1.2e-20 | 82 | 137 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k TRIDC1BG034940.4 82 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 137 688999***********************************************998 PP | |||||||
2 | START | 126.8 | 2.6e-40 | 304 | 548 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddkeqWdet 75 la +aa+ l+k+ +e++W + + ++ + ev+ +e ++ ++e r+s+vv+m++ +lv +ld++ +W e TRIDC1BG034940.4 304 LASTAADHLIKMCRTSEQLWARRRgAGPSSGEVMDAEEHARMlswpidsgkqqqadvahaARTEGTRDSAVVIMNSITLVDAFLDQN-KWMEL 395 78899999**************9998888888888888777788888888899999999999999**********************.***** PP -S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE.......-TTS--.-TTSEE-EE CS START 76 la....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd.......seqkppesssvvRael 147 ++ ka t++vi g g l lm+ae+q+lsplvp R++vf Ry+ +g+w ivd d ++q+++ +ss+vR+++ TRIDC1BG034940.4 396 FPsivcKARTIQVIHHGaasghlssGSLILMQAEMQFLSPLVPvREVVFFRYCVHnADEGTWSIVDFPADgfqeellQQQQQQ-TSSLVRCRR 487 *******************************************************9999******987653322221333433.9******** PP SSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 +pSg++i++ +ng+s+v+wveh+++ g + +++ v g+a+ga +wv+ lqrqce+ TRIDC1BG034940.4 488 RPSGCIIQDAPNGYSRVVWVEHMEVVGEEKplQPVFKDHVAGGAAFGATRWVSVLQRQCER 548 ************************98876549***************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 831 aa Download sequence |
SQKEEGVMGG LHMAKDEELD LDMEMELSGG SGSGHLDGLL SFVDVDDDRD QKPQHSEPDG 60 AGAEHHPSSS AAAAASNGNG KKKRYHRHTA HQIQQMEALF KECPHPDDKQ RLKLSQELGL 120 KPRQVKFWFQ NRRTQMKAQQ DRADNVILRA ENESLKTDNY RLQAAIRNVV CPSCGHAAVI 180 GDMSYEEQNL RIENARLKDE LDRLACIASR YGGGRQPGMS SASALSCMSA PPPVLMPPLD 240 LDMNVYSRHF ADCAEQQHGA MDLMALPQQM ASGGHGIAAT ASYLQGPMTP VVVQDQDKQL 300 VMELASTAAD HLIKMCRTSE QLWARRRGAG PSSGEVMDAE EHARMLSWPI DSGKQQQADV 360 AHAARTEGTR DSAVVIMNSI TLVDAFLDQN KWMELFPSIV CKARTIQVIH HGAASGHLSS 420 GSLILMQAEM QFLSPLVPVR EVVFFRYCVH NADEGTWSIV DFPADGFQEE LLQQQQQQTS 480 SLVRCRRRPS GCIIQDAPNG YSRVVWVEHM EVVGEEKPLQ PVFKDHVAGG AAFGATRWVS 540 VLQRQCERLA SELARSIADQ GVIRTPEART NMMKLSQRMI TAFCANISAS GSQSWTALSD 600 STEDTVRITT RKNTEPGQPS GVILTAVSTS WLPFSHQQVF ELLADEQQRC QLEILSTGGS 660 LHEVAHIANG SHPRNCISLL RINSASNSSQ NVELLLQESS IHPDGGSLVV FATVDVDAIQ 720 VTMSGEDPSY IPLLPMGFAI FPATSPSPGA TSSDTTSNGE TSPGNADEPA AGCLLTVGMQ 780 VLASAVPSAK LNLSSVTAIN SHICNTIHQI TTALKGAGGG RTEPAPAGSD Q |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG034940.4 |