PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG034940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 738aa MW: 81164.9 Da PI: 6.3639 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1.1e-20 | 138 | 193 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++++e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k TRIDC1BG034940.1 138 KKRYHRHTAHQIQQMEALFKECPHPDDKQRLKLSQELGLKPRQVKFWFQNRRTQMK 193 688999***********************************************998 PP | |||||||
2 | START | 126.2 | 4.1e-40 | 360 | 604 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.EXCCTTEEEEEEESSS...................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT CS START 2 laeeaaqelvkkalaeepgWvkss.esengdevlqkfeeskv..................dsgealrasgvvdmvlallveellddkeqWdet 75 la +aa+ l+k+ +e++W + + ++ + ev+ +e ++ ++e r+s+vv+m++ +lv +ld + +W e TRIDC1BG034940.1 360 LASTAADHLIKMCRTSEQLWARRRgAGPSSGEVMDAEEHARMlswpidsgkqqqadvahaARTEGTRDSAVVIMNSITLVDAFLDAN-KWMEL 451 78899999**************9998888888888888777788888888899999999999999**********************.***** PP -S....EEEEEEEECTT........EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE.......-TTS--.-TTSEE-EE CS START 76 la....kaetlevissg........galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvd.......seqkppesssvvRael 147 ++ ka t++vi g g l lm+ae+q+lsplvp R++vf Ry+ +g+w ivd d ++q+++ +ss+vR+++ TRIDC1BG034940.1 452 FPsivcKARTIQVIHHGaasghlssGSLILMQAEMQFLSPLVPvREVVFFRYCVHnADEGTWSIVDFPADgfqeellQQQQQQ-TSSLVRCRR 543 *******************************************************9999******987653322221333433.9******** PP SSEEEEEEEECTCEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206 +pSg++i++ +ng+s+v+wveh+++ g + +++ v g+a+ga +wv+ lqrqce+ TRIDC1BG034940.1 544 RPSGCIIQDAPNGYSRVVWVEHMEVVGEEKplQPVFKDHVAGGAAFGATRWVSVLQRQCER 604 ************************98876549***************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 738 aa Download sequence |
MFGDCQVLSS MAAMAAGGSS ADALFASPLM PNPGALAGFM SNSSAMPFHH HFSTNLIPKE 60 EGVMGGLHMA KDEELDLDME MELSGGSGSG HLDGLLSFVD VDDDRDQKPQ HSEPDGAGAE 120 HHPSSSAAAA ASNGNGKKKR YHRHTAHQIQ QMEALFKECP HPDDKQRLKL SQELGLKPRQ 180 VKFWFQNRRT QMKAQQDRAD NVILRAENES LKTDNYRLQA AIRNVVCPSC GHAAVIGDMS 240 YEEQNLRIEN ARLKDELDRL ACIASRYGGG RQPGMSSASA LSCMSAPPPV LMPPLDLDMN 300 VYSRHFADCA EQQHGAMDLM ALPQQMASGG HGIAATASYL QGPMTPVVVQ DQDKQLVMEL 360 ASTAADHLIK MCRTSEQLWA RRRGAGPSSG EVMDAEEHAR MLSWPIDSGK QQQADVAHAA 420 RTEGTRDSAV VIMNSITLVD AFLDANKWME LFPSIVCKAR TIQVIHHGAA SGHLSSGSLI 480 LMQAEMQFLS PLVPVREVVF FRYCVHNADE GTWSIVDFPA DGFQEELLQQ QQQQTSSLVR 540 CRRRPSGCII QDAPNGYSRV VWVEHMEVVG EEKPLQPVFK DHVAGGAAFG ATRWVSVLQR 600 QCERLASELA RSIADQGVIR TPEARTNMMK LSQRMITAFC ANISASGSQS WTALSDSTED 660 TVRITTRKNT EPGQPSGVIL TAVSTSWLPF SHQQVFELLA DEQQRCQSLR FCQLGAHFMR 720 WHILQMDHTQ GTAFLFFA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG034940.1 |