PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG033780.9

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 910aa MW: 96464.3 Da PI: 6.7613

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG033780.9	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.5e-06	890	909	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1BG033780.9 890 ICK-YYENGHCWKGPSCSFVH 909 799.6666************* PP

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence
MKYGLIPRLK VGDIYEIAKS FQSLQINDWL VNEKQRLSHL RDRASETGRR KELRECVEKL 60 QLLNTPEEIA RKINEVPEVH VDPHMAPTYE SAEEWNDETT VDLTINRNGP GLLFPGREGT 120 ESNAVQYLSQ KCSDASRHSS LNLPMEGVTH IPGAGSITNL QAANGWNVPR PRIDLNNTAG 180 DAASVPSSGV VSSDTEPEKV WHYKDPSGNV QGPFTLSQLS KWTTYFPSGM KIWLTFESEE 240 NSLLLTEVLS TQQKDIIQPT PVINNNKSAW AGSGQDRINP SMTGNITSPI GYNVGKTKEI 300 MNLQKPCPPD ASNASVNQLF EPKIDSVLSP GTQDQYPSPN PKFERKQPVM NKSGSTSVAP 360 EDSATKAYDH SSIDFVSETS GPPSSKFVGL QLLKETQTSC VEERDLKDGG CVTQTAPLKG 420 DATSAKRDNI TVSSVSDAGV CDVLGSLTEP NCGTYNVHAG MPLENVNPAS AEEERPQCSS 480 PIALSPWGEP SYYQGGAVDS ALWGVQDDPS NDIWSLSSPT PALQPSSDLG ADGKDTSCIL 540 EEAVVARGNS AVGEIPPTPE EKMEKGNPSA STDCGVPGQV KLKPSAALLN SSLKSTEASG 600 GQPLGSSLEG STKASGRQPV GSFLDGNTKV SGRQASGQFL EGSTKASGWQ SGSSLETSTK 660 GSGWGSSVDG STKGSGWGSS VDGSTKGSGR GLSLEVNTKG SGWGSSLEGG TKGSGWGSSL 720 EGGTKGSGWG SSLEGSTQAS GWLRSSSSPE GRKTPGRHSS ARESSKVNFK SGSQNRNSSS 780 GHQTTPTAKS SAEAQRRQGS TNSNSAGWGE APGSNKSWHP SSGSASRGSQ SNQHHDRHSH 840 GNESRRGSYQ GNDSRPGSSN HSRRSSDHRQ DHGSGMSSRS SSRGQSQRGI CKYYENGHCW 900 KGPSCSFVHR

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence

MKYGLIPRLK VGDIYEIAKS FQSLQINDWL VNEKQRLSHL RDRASETGRR KELRECVEKL  60
QLLNTPEEIA RKINEVPEVH VDPHMAPTYE SAEEWNDETT VDLTINRNGP GLLFPGREGT  120
ESNAVQYLSQ KCSDASRHSS LNLPMEGVTH IPGAGSITNL QAANGWNVPR PRIDLNNTAG  180
DAASVPSSGV VSSDTEPEKV WHYKDPSGNV QGPFTLSQLS KWTTYFPSGM KIWLTFESEE  240
NSLLLTEVLS TQQKDIIQPT PVINNNKSAW AGSGQDRINP SMTGNITSPI GYNVGKTKEI  300
MNLQKPCPPD ASNASVNQLF EPKIDSVLSP GTQDQYPSPN PKFERKQPVM NKSGSTSVAP  360
EDSATKAYDH SSIDFVSETS GPPSSKFVGL QLLKETQTSC VEERDLKDGG CVTQTAPLKG  420
DATSAKRDNI TVSSVSDAGV CDVLGSLTEP NCGTYNVHAG MPLENVNPAS AEEERPQCSS  480
PIALSPWGEP SYYQGGAVDS ALWGVQDDPS NDIWSLSSPT PALQPSSDLG ADGKDTSCIL  540
EEAVVARGNS AVGEIPPTPE EKMEKGNPSA STDCGVPGQV KLKPSAALLN SSLKSTEASG  600
GQPLGSSLEG STKASGRQPV GSFLDGNTKV SGRQASGQFL EGSTKASGWQ SGSSLETSTK  660
GSGWGSSVDG STKGSGWGSS VDGSTKGSGR GLSLEVNTKG SGWGSSLEGG TKGSGWGSSL  720
EGGTKGSGWG SSLEGSTQAS GWLRSSSSPE GRKTPGRHSS ARESSKVNFK SGSQNRNSSS  780
GHQTTPTAKS SAEAQRRQGS TNSNSAGWGE APGSNKSWHP SSGSASRGSQ SNQHHDRHSH  840
GNESRRGSYQ GNDSRPGSSN HSRRSSDHRQ DHGSGMSSRS SSRGQSQRGI CKYYENGHCW  900
KGPSCSFVHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	2e-24	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG033780.9