PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG033780.7

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 766aa MW: 79981.8 Da PI: 7.0725

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG033780.7	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.7	6.2e-06	746	765	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1BG033780.7 746 ICK-YYENGHCWKGPSCSFVH 765 799.6666************* PP

Sequence ? help Back to Top
Protein Sequence Length: 766 aa Download sequence
MEGVTHIPGA GSITNLQAAN GWNVPRPRID LNNTAGDAAS VPSSGVVSSD TEPEKVWHYK 60 DPSGNVQGPF TLSQLSKWTT YFPSGMKIWL TFESEENSLL LTEVLSTQQK DIIQPTPVIN 120 NNKSAWAGSG QDRINPSMTG NITSPIGYNV GKTKEIMNLQ KPCPPDASNA SVNQLFEPKI 180 DSVLSPGTQD QYPSPNPKFE RKQPVMNKSG STSVAPEDSA TKAYDHSSID FVSETSGPPS 240 SKFVGLQLLK ETQTSCVEER DLKDGGCVTQ TAPLKGDATS AKRDNITVSS VSDAGVCDVL 300 GSLTEPNCGT YNVHAGMPLE NVNPASAEEE RPQCSSPIAL SPWGEPSYYQ GGAVDSALWG 360 VQDDPSNDIW SLSSPTPALQ PSSDLGADGK DTSCILEEAV VARGNSAVGE IPPTPEEKME 420 KGNPSASTDC GVPGQVKLKP SAALLNSSLK STEASGGQPL GSSLEGSTKA SGRQPVGSFL 480 DGNTKVSGRQ ASGQFLEGST KASGWQSGSS LETSTKGSGW GSSVDGSTKG SGWGSSVDGS 540 TKGSGRGLSL EVNTKGSGWG SSLEGGTKGS GWGSSLEGGT KGSGWGSSLE GSTQASGWLR 600 SSSSPEGRKT PGRHSSARES SKVNFKSGSQ NRNSSSGHQT TPTAKSSAEA QRRQGSTNSN 660 SAGWGEAPGS NKSWHPSSGS ASRGSQSNQH HDRHSHGNES RRGSYQGNDS RPGSSNHSRR 720 SSDHRQDHGS GMSSRSSSRG QSQRGICKYY ENGHCWKGPS CSFVHR

Sequence ? help Back to Top

Protein Sequence Length: 766 aa Download sequence

MEGVTHIPGA GSITNLQAAN GWNVPRPRID LNNTAGDAAS VPSSGVVSSD TEPEKVWHYK  60
DPSGNVQGPF TLSQLSKWTT YFPSGMKIWL TFESEENSLL LTEVLSTQQK DIIQPTPVIN  120
NNKSAWAGSG QDRINPSMTG NITSPIGYNV GKTKEIMNLQ KPCPPDASNA SVNQLFEPKI  180
DSVLSPGTQD QYPSPNPKFE RKQPVMNKSG STSVAPEDSA TKAYDHSSID FVSETSGPPS  240
SKFVGLQLLK ETQTSCVEER DLKDGGCVTQ TAPLKGDATS AKRDNITVSS VSDAGVCDVL  300
GSLTEPNCGT YNVHAGMPLE NVNPASAEEE RPQCSSPIAL SPWGEPSYYQ GGAVDSALWG  360
VQDDPSNDIW SLSSPTPALQ PSSDLGADGK DTSCILEEAV VARGNSAVGE IPPTPEEKME  420
KGNPSASTDC GVPGQVKLKP SAALLNSSLK STEASGGQPL GSSLEGSTKA SGRQPVGSFL  480
DGNTKVSGRQ ASGQFLEGST KASGWQSGSS LETSTKGSGW GSSVDGSTKG SGWGSSVDGS  540
TKGSGRGLSL EVNTKGSGWG SSLEGGTKGS GWGSSLEGGT KGSGWGSSLE GSTQASGWLR  600
SSSSPEGRKT PGRHSSARES SKVNFKSGSQ NRNSSSGHQT TPTAKSSAEA QRRQGSTNSN  660
SAGWGEAPGS NKSWHPSSGS ASRGSQSNQH HDRHSHGNES RRGSYQGNDS RPGSSNHSRR  720
SSDHRQDHGS GMSSRSSSRG QSQRGICKYY ENGHCWKGPS CSFVHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	7e-15	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG033780.7