PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

TRIDC1BG033780.2

Organism

Triticum dicoccoides

Taxonomic ID

85692

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

C3H

Protein Properties

Length: 887aa MW: 94242.7 Da PI: 7.1021

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
TRIDC1BG033780.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.5	7.3e-06	867	886	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1BG033780.2 867 ICK-YYENGHCWKGPSCSFVH 886 799.6666************* PP

Sequence ? help Back to Top
Protein Sequence Length: 887 aa Download sequence
MLFCLQLEFL ISELLFSHLP NSIGLIEGYL YEENTIFCDR HLMEINNFLL FSSFLYFVLH 60 KMIWWKPSFI FKPELSFSVL KMLHVHLSCH IISSNLCLAF FLHKIVDLTI NRNGPGLLFP 120 GREGTESNAV QYLSQKCSDA SRHSSLNLPM EGVTHIPGAG SITNLQAANG WNVPRPRIDL 180 NNTAGDAASV PSSGVVSSDT EPEKVWHYKD PSGNVQGPFT LSQLSKWTTY FPSGMKIWLT 240 FESEENSLLL TEVLSTQQKD IIQPTPVINN NKSAWAGSGQ DRINPSMTGN ITSPIGYNVG 300 KTKEIMNLQK PCPPDASNAS VNQLFEPKID SVLSPGTQDQ YPSPNPKFER KQPVMNKSGS 360 TSVAPEDSAT KETQTSCVEE RDLKDGGCVT QTAPLKGDAT SAKRDNITVS SVSDAGVCDV 420 LGSLTEPNCG TYNVHAGMPL ENVNPASAEE ERPQCSSPIA LSPWGEPSYY QGGAVDSALW 480 GVQDDPSNDI WSLSSPTPAL QPSSDLGADG KDTSCILEEA VVARGNSAVG EIPPTPEEKM 540 EKGNPSASTD CGVPGQVKLK PSAALLNSSL KSTEASGGQP LGSSLEGSTK ASGRQPVGSF 600 LDGNTKVSGR QASGQFLEGS TKASGWQSGS SLETSTKGSG WGSSVDGSTK GSGWGSSVDG 660 STKGSGRGLS LEVNTKGSGW GSSLEGGTKG SGWGSSLEGG TKGSGWGSSL EGSTQASGWL 720 RSSSSPEGRK TPGRHSSARE SSKVNFKSGS QNRNSSSGHQ TTPTAKSSAE AQRRQGSTNS 780 NSAGWGEAPG SNKSWHPSSG SASRGSQSNQ HHDRHSHGNE SRRGSYQGND SRPGSSNHSR 840 RSSDHRQDHG SGMSSRSSSR GQSQRGICKY YENGHCWKGP SCSFVHR

Sequence ? help Back to Top

Protein Sequence Length: 887 aa Download sequence

MLFCLQLEFL ISELLFSHLP NSIGLIEGYL YEENTIFCDR HLMEINNFLL FSSFLYFVLH  60
KMIWWKPSFI FKPELSFSVL KMLHVHLSCH IISSNLCLAF FLHKIVDLTI NRNGPGLLFP  120
GREGTESNAV QYLSQKCSDA SRHSSLNLPM EGVTHIPGAG SITNLQAANG WNVPRPRIDL  180
NNTAGDAASV PSSGVVSSDT EPEKVWHYKD PSGNVQGPFT LSQLSKWTTY FPSGMKIWLT  240
FESEENSLLL TEVLSTQQKD IIQPTPVINN NKSAWAGSGQ DRINPSMTGN ITSPIGYNVG  300
KTKEIMNLQK PCPPDASNAS VNQLFEPKID SVLSPGTQDQ YPSPNPKFER KQPVMNKSGS  360
TSVAPEDSAT KETQTSCVEE RDLKDGGCVT QTAPLKGDAT SAKRDNITVS SVSDAGVCDV  420
LGSLTEPNCG TYNVHAGMPL ENVNPASAEE ERPQCSSPIA LSPWGEPSYY QGGAVDSALW  480
GVQDDPSNDI WSLSSPTPAL QPSSDLGADG KDTSCILEEA VVARGNSAVG EIPPTPEEKM  540
EKGNPSASTD CGVPGQVKLK PSAALLNSSL KSTEASGGQP LGSSLEGSTK ASGRQPVGSF  600
LDGNTKVSGR QASGQFLEGS TKASGWQSGS SLETSTKGSG WGSSVDGSTK GSGWGSSVDG  660
STKGSGRGLS LEVNTKGSGW GSSLEGGTKG SGWGSSLEGG TKGSGWGSSL EGSTQASGWL  720
RSSSSPEGRK TPGRHSSARE SSKVNFKSGS QNRNSSSGHQ TTPTAKSSAE AQRRQGSTNS  780
NSAGWGEAPG SNKSWHPSSG SASRGSQSNQ HHDRHSHGNE SRRGSYQGND SRPGSSNHSR  840
RSSDHRQDHG SGMSSRSSSR GQSQRGICKY YENGHCWKGP SCSFVHR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16485.1	1e-14	C3H family protein

Link Out ? help Back to Top
Ensembl	TRIDC1BG033780.2