PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | TRIDC1BG033780.10 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 826aa MW: 86562.9 Da PI: 6.5603 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 17.6 | 6.7e-06 | 806 | 825 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ ++++G+C+ G++C+F H TRIDC1BG033780.10 806 ICK-YYENGHCWKGPSCSFVH 825 799.6666************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 826 aa Download sequence |
MAPTYESAEE WNDETTVDLT INRNGPGLLF PGREGTESNA VQYLSQKCSD ASRHSSLNLP 60 MEGVTHIPGA GSITNLQAAN GWNVPRPRID LNNTAGDAAS VPSSGVVSSD TEPEKVWHYK 120 DPSGNVQGPF TLSQLSKWTT YFPSGMKIWL TFESEENSLL LTEVLSTQQK DIIQPTPVIN 180 NNKSAWAGSG QDRINPSMTG NITSPIGYNV GKTKEIMNLQ KPCPPDASNA SVNQLFEPKI 240 DSVLSPGTQD QYPSPNPKFE RKQPVMNKSG STSVAPEDSA TKAYDHSSID FVSETSGPPS 300 SKFVGLQLLK ETQTSCVEER DLKDGGCVTQ TAPLKGDATS AKRDNITVSS VSDAGVCDVL 360 GSLTEPNCGT YNVHAGMPLE NVNPASAEEE RPQCSSPIAL SPWGEPSYYQ GGAVDSALWG 420 VQDDPSNDIW SLSSPTPALQ PSSDLGADGK DTSCILEEAV VARGNSAVGE IPPTPEEKME 480 KGNPSASTDC GVPGQVKLKP SAALLNSSLK STEASGGQPL GSSLEGSTKA SGRQPVGSFL 540 DGNTKVSGRQ ASGQFLEGST KASGWQSGSS LETSTKGSGW GSSVDGSTKG SGWGSSVDGS 600 TKGSGRGLSL EVNTKGSGWG SSLEGGTKGS GWGSSLEGGT KGSGWGSSLE GSTQASGWLR 660 SSSSPEGRKT PGRHSSARES SKVNFKSGSQ NRNSSSGHQT TPTAKSSAEA QRRQGSTNSN 720 SAGWGEAPGS NKSWHPSSGS ASRGSQSNQH HDRHSHGNES RRGSYQGNDS RPGSSNHSRR 780 SSDHRQDHGS GMSSRSSSRG QSQRGICKYY ENGHCWKGPS CSFVHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16485.1 | 7e-15 | C3H family protein |
Link Out ? help Back to Top | |
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Ensembl | TRIDC1BG033780.10 |