PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG022160.8
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 116aa    MW: 13220.1 Da    PI: 10.5468
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG022160.8genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.71.2e-31959151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+
  TRIDC1BG022160.8  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 59
                      79***********************************************95 PP
2K-box23.52.3e-0976109336
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqR 36 
                       +ss   ++e +a+++qqe+akLk++i +Lq+++R
  TRIDC1BG022160.8  76 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNR 109
                       444555999*********************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    
MGRGRIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSG RGRLYEYSNN  60
SVKATIERYK KATSDTSSAG TVAEINAQHY QQESAKLKQQ ITTLQNSNRF IFSPRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.19e-67MIKC_MADS family protein