PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIDC1BG022160.5
Organism
Triticum dicoccoides
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 268aa    MW: 30256.9 Da    PI: 9.2906
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIDC1BG022160.5genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.45.9e-314696151
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                      krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs +g+lyeys+
  TRIDC1BG022160.5 46 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSGRGRLYEYSN 96
                      79***********************************************95 PP
2K-box103.82.2e-341132103100
             K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                       +ss   ++e +a+++qqe+akLk++i +Lq+++R l+G+ + ++s+++L+qLe +L+k+l kiR++Knell+++ie++q++e elq++n  Lr
  TRIDC1BG022160.5 113 TSSAGTVAEINAQHYQQESAKLKQQITTLQNSNRTLIGDTMATMSHRDLKQLEGRLDKGLGKIRARKNELLCAEIEYMQRREMELQNNNFFLR 205
                       4455559999*********************************************************************************** PP

             K-box  96 kklee 100
                       +k++e
  TRIDC1BG022160.5 206 EKVAE 210
                       **986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
SSARESGIFT AQPEIQPVKE SASPGSGSGS PGGAAEKMGR GRIEIKRIEN TTNRQVTFCK  60
RRNGLLKKAY ELSVLCDAEV ALIVFSGRGR LYEYSNNSVK ATIERYKKAT SDTSSAGTVA  120
EINAQHYQQE SAKLKQQITT LQNSNRTLIG DTMATMSHRD LKQLEGRLDK GLGKIRARKN  180
ELLCAEIEYM QRREMELQNN NFFLREKVAE TERGQQQTLN MMGAASTSDE YEQNMIHCDP  240
RTFLQFNFMQ QQPQYYSQQE DRKSLNSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.14e-96MIKC_MADS family protein